Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329A01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.051
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.051
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.20 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.3 bits (60), Expect = 0.051
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 334  REEDLGQLVCRATNSFGEQKRPCTYTITPGGAPISPECVVIRSYPNVLRVQCKKAWNGG 510
            + +D G   C+  N+ G  K    YT+T    P +P   V  S  + + +  K   NGG
Sbjct: 1375 QSQDGGDYTCQVENAQGNDK--LHYTLTVQVPPSAPVLYVTSSTSSSILLHWKSGHNGG 1431


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.051
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 334  REEDLGQLVCRATNSFGEQKRPCTYTITPGGAPISPECVVIRSYPNVLRVQCKKAWNGG 510
            + +D G   C+  N+ G  K    YT+T    P +P   V  S  + + +  K   NGG
Sbjct: 1371 QSQDGGDYTCQVENAQGNDK--LHYTLTVQVPPSAPVLYVTSSTSSSILLHWKSGHNGG 1427


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 129 FRPFCLSNRQDDVGAVHGEAETVTCEVEASPEPXAI 236
           F  + +S   D +  ++GE  T+ CE+     P A+
Sbjct: 855 FGKYMVSPSNDALFVLNGETRTINCEIGGLQHPGAV 890


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 400 RVASAPRKNWWPGRRAGQDLPR 335
           ++A  PR+N  PG +  +D PR
Sbjct: 49  KLAFEPRRNPGPGSKGPRDFPR 70


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 353 SSSAGPPILSGSRSDPARTP 412
           S++ G PI+ G  + P RTP
Sbjct: 314 SAAIGSPIVLGLNNTPDRTP 333


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 366 GHQFFRGAEATLHVHHYTGGRTYLTRVCSHS 458
           G  F   A  T H   +TG + Y    CS S
Sbjct: 98  GKTFAVPARLTRHYRTHTGEKPYQCEYCSKS 128


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 372 GGPADELAKIFLAW 331
           G PAD L K+F  W
Sbjct: 96  GQPADALPKLFKEW 109


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 237 ELPSVRVMLPPRTSLFRPLRAQ 172
           ++P +R +LP    +F P RA+
Sbjct: 47  DVPGLRQVLPNGNLVFPPFRAE 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,956
Number of Sequences: 438
Number of extensions: 3536
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)