Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328H09f
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    31   0.073
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    30   0.17 
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    28   0.51 
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    27   1.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   2.1  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    24   8.4  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    24   8.4  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    24   8.4  

>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 31.1 bits (67), Expect = 0.073
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 53  LSPELRDQSTSPQTRHFGSSQ-PTNGAFRYLKHRSSFSSNPSLATKGSTSKLTLRHSPLS 229
           +S E R+    P+   +G+S+ P   +  YL+ R S +   SL+   STS+ T +   LS
Sbjct: 255 VSGESRNLMVDPKVSPYGNSRTPLRDSSNYLRDRRSINRQSSLSIPKSTSETTRKTLALS 314


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 29.9 bits (64), Expect = 0.17
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 159  NDDRCLRYLKAPLVGWEDPK*RVWGDVD*SLSSGESLMRWKQS 31
            N D  LR +K  L GW +    VW D+D        L+ W+QS
Sbjct: 2735 NIDNKLRDIKVVLQGWRERLPNVWDDID----IWSDLIAWRQS 2773


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +2

Query: 20  VDVEDCFHRIRLSPELRDQSTSPQTRHFGSSQPTNGAFRYLKHRSSFSSNPS---LATKG 190
           V +EDC  R+  SP L ++ T  +     S QPT  A R      S S+  S   + T  
Sbjct: 56  VGLEDCLDRLEASPILTNEGTIKKWIAAPSVQPTLLAPRRTSPLPSVSAGQSHINIVTAS 115

Query: 191 STSKLT 208
              KLT
Sbjct: 116 GAKKLT 121


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 312 NTDPSKSRASQNLPLDRKSDPLRRSGEKLN 223
           N  PS +  S+N+ ++ + D +   G+KLN
Sbjct: 140 NKKPSVNNVSENISVNTEDDKVEEVGQKLN 169


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 90  KHVISDPPNPLTVLLGTSSTGH 155
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 2   IKSSKQVDVEDCFHRIRLSPELRDQSTSPQTRHF 103
           IK  ++ +VED  +++ LSP   D ++S  + HF
Sbjct: 3   IKGGRRGNVEDSLNKLSLSPP--DNNSSFLSNHF 34


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 313 SNXHRX*DPXSSPTVKATLI*PP-HGLSSFRVE 408
           +N H   DP  S T  AT + PP +  S FR +
Sbjct: 195 NNSHNIPDPNLSQTFSATSMGPPNNNYSKFRTD 227


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 56  SPELRDQSTSPQTRHFGSSQPTNGAFRYLKHRSSF 160
           +P+      SP T++ GS+  T  +   L+  SSF
Sbjct: 80  NPDTPSNLDSPSTQNVGSTNNTRASQSLLRRSSSF 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,641,236
Number of Sequences: 5004
Number of extensions: 29810
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)