Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328H09f
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   9.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 202 INPQTQPIEFLAGSSQWVAFPIQW*ILR-STALARVRVSN 318
           INP T+ +EF+ G  + +  P    I R S A    +++N
Sbjct: 395 INPWTKKLEFVVGQHRILKGPANPDIFRVSCATEHSQLTN 434


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 202 INPQTQPIEFLAGSSQWVAFPIQW*ILR-STALARVRVSN 318
           INP T+ +EF+ G  + +  P    I R S A    +++N
Sbjct: 101 INPWTKKLEFVVGQHRILKGPANPDIFRVSCATEHSQLTN 140


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 283 AESTTGSEKRPTEKIRRETQ 224
           A  TTG+   PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 282 QNLPLDRKSDPL 247
           +N P+DR+S PL
Sbjct: 167 RNFPMDRQSCPL 178


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 126 PLVGWEDPK 100
           PLVGW+D +
Sbjct: 200 PLVGWKDKR 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,073
Number of Sequences: 438
Number of extensions: 1881
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)