Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328H08f
(475 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 242 2e-65
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 241 3e-65
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 241 3e-65
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 134 5e-33
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 126 1e-30
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 81 6e-17
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 55 6e-09
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 47 1e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 44 9e-06
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 44 9e-06
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 44 1e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 6e-04
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 31 0.068
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 31 0.090
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.21
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 29 0.36
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.5
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 26 2.5
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 3.4
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 5.9
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.9
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 25 7.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 242 bits (592), Expect = 2e-65
Identities = 111/123 (90%), Positives = 115/123 (93%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFXYAWVL 286
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSF YAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 287 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCXVLIVAAGT 466
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADC VLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 467 GEF 475
GEF
Sbjct: 121 GEF 123
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 241 bits (591), Expect = 3e-65
Identities = 110/123 (89%), Positives = 115/123 (93%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFXYAWVL 286
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSF YAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 287 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCXVLIVAAGT 466
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADC +LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 467 GEF 475
GEF
Sbjct: 121 GEF 123
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 241 bits (591), Expect = 3e-65
Identities = 110/123 (89%), Positives = 115/123 (93%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFXYAWVL 286
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSF YAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 287 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCXVLIVAAGT 466
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADC +LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 467 GEF 475
GEF
Sbjct: 121 GEF 123
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 134 bits (325), Expect = 5e-33
Identities = 59/119 (49%), Positives = 84/119 (70%)
Frame = +2
Query: 119 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFXYAWVLDKLK 298
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 299 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCXVLIVAAGTGEF 475
ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEF
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEF 354
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 126 bits (305), Expect = 1e-30
Identities = 59/119 (49%), Positives = 78/119 (65%)
Frame = +2
Query: 119 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFXYAWVLDKLK 298
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 299 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCXVLIVAAGTGEF 475
ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD VL+V + F
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNF 293
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 81.4 bits (192), Expect = 6e-17
Identities = 46/120 (38%), Positives = 67/120 (55%)
Frame = +2
Query: 113 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFXYAWVLDK 292
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 293 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCXVLIVAAGTGE 472
E+ RGITI A ++ET+ + +D PGH D+IKNMITG + D +++V+A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 54.8 bits (126), Expect = 6e-09
Identities = 36/113 (31%), Positives = 52/113 (46%)
Frame = +2
Query: 131 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFXYAWVLDKLKAERE 310
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 311 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCXVLIVAAGTG 469
RGITI+ A F + +ID PGH DF + + D V I+ G
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 47.2 bits (107), Expect = 1e-06
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Frame = +2
Query: 131 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFXYAWVLDKLKAERE 310
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 311 RGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCXVLIVAAGTG 469
RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 44.4 bits (100), Expect = 9e-06
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFXYA 277
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 278 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCXVLIV 454
+ L AE D+ + + + V +ID+PGH DF + D +++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 44.4 bits (100), Expect = 9e-06
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFXYA 277
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 278 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCXVLIV 454
+ L AE D+ + + + V +ID+PGH DF + D +++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 44.0 bits (99), Expect = 1e-05
Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Frame = +2
Query: 131 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFXYAWVLDKLKAERE 310
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 311 RGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIKNMITGTSQA 433
+GITI A W+ FE S Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169
Query: 434 DCXVLIVAAGTG 469
D VL++ A +G
Sbjct: 170 DGAVLVLCAVSG 181
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect(2) = 6e-04
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 254 GKGSFXYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 427
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 428 QADCXVLIVAAGTG 469
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
Score = 22.2 bits (45), Expect(2) = 6e-04
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 134 IVVIGHVDSGKST 172
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 31.5 bits (68), Expect = 0.068
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Frame = +2
Query: 131 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKGSFXYAWVLDKLKA 301
N ++ HVD GK+T L+ G I + T+ + E+ +G + K A
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG------ITMKSSA 74
Query: 302 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCXVLIVAAGTG 469
I K Y + +ID+PGH DF + + + D ++V A G
Sbjct: 75 ISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 31.1 bits (67), Expect = 0.090
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Frame = +2
Query: 140 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFXYAWVLDKLKAERER 313
++GHVD+GK+ +L + +++ E Q++G F + K K ++
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 314 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCXVLIV 454
G K + + + IID PGH F GTS + +L++
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.21
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 287 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 409
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 29.1 bits (62), Expect = 0.36
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 362 YVTIIDAPGHRDFIKNMITGTSQADCXVLIVA 457
+V+ +D PGH + M+ G + D +L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 1.5
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Frame = +2
Query: 131 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFXYAWVLDKLKAERE 310
+ +V GH+ GKS L+Y + + + S Y D ERE
Sbjct: 142 SFIVAGHLHHGKSALLDLLVYYT-----------HPDTKPPKRRSLRYT---DTHYLERE 187
Query: 311 RGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCXVLIV 454
R ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 188 RVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 2.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 348 SNFQRAISIVMPRSRSAFSLSNTQAYXKDPLPISWASFSNFSMV 217
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 314 HAHAQPLVCPIPKHX*RILYPFPGPPSRTSRWY 216
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 5.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 248 PGPPSRTSRWYVCQYHHIC 192
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 445 HXAISLRGSCDHVLDEISVSRSINDGNIVLASFEL 341
H ++ CDH+L IS SR G + FEL
Sbjct: 14 HVLFAICYFCDHLLQYISNSRDSKAGLKIFLVFEL 48
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = +2
Query: 314 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCXVLIVAA 460
G D ++K + + + + PGH D I+++ S LI A
Sbjct: 189 GCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPSMGSSYYLIATA 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,882,124
Number of Sequences: 5004
Number of extensions: 34457
Number of successful extensions: 135
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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