Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328H07f
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    31   0.10 
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    25   5.1  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   5.1  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   9.0  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    25   9.0  

>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 435 SWIKTCAVFKSCLPIYDKRMYLDTFFSCLSFG 340
           +++K C V +  LP+ D  +Y+  F S L FG
Sbjct: 170 TFLKLCRVLRPNLPLLDPSLYISRFASLLEFG 201


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 453 KCYFQDSWIKTCAVFKSCLPIYDKRMYL 370
           K  F  +WI     F  C P+  KR++L
Sbjct: 411 KYLFTGAWIAMLLTFDKCAPVPVKRVFL 438


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 215 TLGKLY*ERLVNLKKVGILQQPRTLAMD 298
           +LGK Y +R  + K VG+L+  + LA++
Sbjct: 669 SLGKFYKKRKKSYKPVGVLEAQQYLALE 696


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 37  LIKELCSECALDTAVMMCPTTALYFVLMLLS 129
           L ++LC  C+L+   ++C ++     L+LLS
Sbjct: 756 LSEKLCEICSLEVGPIVCYSSLKVLFLLLLS 786


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 303 KHEHWNSTKRR-LHRNSDS*RRYPNTFVCRK 392
           K+EH  S +   L+RNS S +RYP +  C +
Sbjct: 64  KNEHETSCRSVVLYRNSKSAKRYPLSTKCAR 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,783
Number of Sequences: 5004
Number of extensions: 32337
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)