Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328H07f
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              23   1.9  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              23   1.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   5.7  
AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly pro...    21   5.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.6  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 143 CAVVNDSNINTKYNAVV 93
           C+V++D+NI  ++N +V
Sbjct: 104 CSVISDANIYIRFNKLV 120


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 143 CAVVNDSNINTKYNAVV 93
           C+V++D+NI  ++N +V
Sbjct: 104 CSVISDANIYIRFNKLV 120


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 452 FYIKYNSWXMLKIKQHLLVLRY 517
           F+++  SW + K   H+L + Y
Sbjct: 321 FWLEQYSWALFKAMSHMLCIGY 342


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 452 FYIKYNSWXMLKIKQHLLVLRY 517
           F+++  SW + K   H+L + Y
Sbjct: 289 FWLEQYSWALFKAMSHMLCIGY 310


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 286 ASDGPLSTNTGIQLNEDFTETQTAKEGI 369
           A +G  +TNT + +N +       K+G+
Sbjct: 141 AGEGRFNTNTEVVINTEVKSIPVTKKGV 168


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 42  KGTVLRVCIGHCCHDVPNDGV 104
           K  +L VC+G  C DV +  V
Sbjct: 3   KWLLLVVCLGIACQDVTSAAV 23


>AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly
           protein MRJP3 protein.
          Length = 31

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 42  KGTVLRVCIGHCCHDVPNDGV 104
           K  +L VC+G  C DV +  V
Sbjct: 3   KWLLLVVCLGIACQDVTSAAV 23


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 450 CYFQDSWIKTCAVFK 406
           CYF+ SW+     F+
Sbjct: 55  CYFRQSWVDRRLAFQ 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,769
Number of Sequences: 438
Number of extensions: 2386
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)