Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328H04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   2.2  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.2  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    25   9.0  

>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 163 TRALTLLTSKSSF*IKTSLLFLFLLQRRIKYHIVVHVY 50
           TR   L  S   F  K   +F+ LLQR++KY  +++ Y
Sbjct: 481 TRLNRLFLSIKYFSEKAMRVFILLLQRQVKYSELLNYY 518


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 62  DDMIFDPSLXXXXXXXTGFDLEAALAGEQGESTSMETPADTGDVDA 199
           DD+  D  L        G +  A  A EQ E++S+  P+D  + D+
Sbjct: 282 DDLNLDLGLDDLLGDEQGANAPAIEADEQAETSSIHLPSDIMEDDS 327


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 152 ESTSMETPADTGDVDAPEDD 211
           E+TS     D GD+  PEDD
Sbjct: 43  ENTSNNNATDLGDLAPPEDD 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,378,345
Number of Sequences: 5004
Number of extensions: 16569
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)