Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328H03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.47 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.9  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   1.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 16  LRNHASMQYHPSPATAYRRLLRSLTE 93
           LR +   +  P+P T + RLL  LTE
Sbjct: 508 LRAYVDNRRRPNPGTVFARLLSVLTE 533


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 434 VGACSLRCDLGADNKSACDYSRWV 363
           + ACSL C+ G   K   D   WV
Sbjct: 446 ISACSLPCEPGMIKKQQGDTCCWV 469


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 434 VGACSLRCDLGADNKSACDYSRWV 363
           + ACSL C+ G   K   D   WV
Sbjct: 536 ISACSLPCEPGMIKKQQGDTCCWV 559


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 388 DLLSAPRSQRNEHAPTCCT 444
           D+L  P S+  E+ P CCT
Sbjct: 216 DILEVPASRNEEYYP-CCT 233


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 1   KNVVGLRNHASMQYHP 48
           KNV+G   HA MQ  P
Sbjct: 76  KNVLGSMQHAQMQQQP 91


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 278 PPIRSYHQLLYVPYNAHYHYQ 340
           P   S+H+L+ +P +  Y Y+
Sbjct: 522 PKYDSHHKLIEIPEDLKYFYE 542


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 278 PPIRSYHQLLYVPYNAHYHYQ 340
           P   S+H+L+ +P +  Y Y+
Sbjct: 522 PKYDSHHKLIEIPEDLKYFYE 542


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/43 (23%), Positives = 15/43 (34%)
 Frame = +2

Query: 5   TSSDYVTTRPCSTTPVPQQHTDACYAHSQNMASFAHYQQHRHH 133
           T++   TT   +T       T       + +    H Q H HH
Sbjct: 108 TTTTTTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHHHH 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,306
Number of Sequences: 438
Number of extensions: 3742
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)