Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328H02f
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980...    28   3.1  
04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412     27   7.1  
06_03_0830 + 25159758-25162460                                         27   9.3  
06_01_1082 - 8847795-8848033,8848511-8848724                           27   9.3  

>06_03_1274 +
           28897491-28897707,28897804-28897935,28898029-28898096,
           28898216-28898280,28898468-28898534,28898630-28898917,
           28898995-28899102,28899236-28899487,28899918-28899997,
           28900092-28900185,28900728-28900810,28901319-28901873,
           28902085-28902616
          Length = 846

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 239 YENDVLFFIYNRQFNDALELGTIVNASGDRKAVGHDGEVAGLPD 108
           Y   V FF YN+ F+  + + T+V  +G+  ++G  G +  L D
Sbjct: 764 YSGSVGFFSYNKTFDLNIVIRTVVLHNGE-ASIGAGGAIVALSD 806


>04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412
          Length = 184

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 273 HQGAMVLPARQVRKRRPVLHLQSPIQRCLGARYDRERLGRPQG 145
           H+G  VLP +      P+LH ++   R +G R DR R G   G
Sbjct: 10  HRGPAVLPLQHQDPESPLLHARA---RRVGDREDRVREGHGGG 49


>06_03_0830 + 25159758-25162460
          Length = 900

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 194 DALELGTIVNASGDRKAVGHDGEVAGLPDIYS 99
           DALE+  +V    +R+ + + G   G PDI S
Sbjct: 404 DALEVARLVAIEVEREVIDYRGPFCGSPDINS 435


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 260 WFFQPAKYENDVLFFIYNRQFNDALELG 177
           W      Y  DVL F YN++++D   +G
Sbjct: 59  WLAGKTFYAGDVLVFKYNKEYHDVAVVG 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,697,809
Number of Sequences: 37544
Number of extensions: 207851
Number of successful extensions: 555
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)