Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328H01f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M31423-1|AAA51962.1|  223|Homo sapiens CDR1 protein.                   29   7.5  
M16965-1|AAA52472.1|  223|Homo sapiens CDR1 protein.                   29   7.5  
BC113474-1|AAI13475.1|  262|Homo sapiens cerebellar degeneration...    29   7.5  
BC113472-1|AAI13473.1|  262|Homo sapiens cerebellar degeneration...    29   7.5  
AY065987-1|AAL49979.1|  170|Homo sapiens potassium voltage-gated...    29   7.5  
AL078639-1|CAI42370.1|  262|Homo sapiens cerebellar degeneration...    29   7.5  

>M31423-1|AAA51962.1|  223|Homo sapiens CDR1 protein.
          Length = 223

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 6/25 (24%), Positives = 23/25 (92%)
 Frame = -3

Query: 516 QKVPIIKEVPVIKELPIIREVPVVK 442
           + VP+++++P+++++P++ +VP+++
Sbjct: 11  EDVPLLEDIPLLEDVPLLEDVPLLE 35


>M16965-1|AAA52472.1|  223|Homo sapiens CDR1 protein.
          Length = 223

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 6/25 (24%), Positives = 23/25 (92%)
 Frame = -3

Query: 516 QKVPIIKEVPVIKELPIIREVPVVK 442
           + VP+++++P+++++P++ +VP+++
Sbjct: 11  EDVPLLEDIPLLEDVPLLEDVPLLE 35


>BC113474-1|AAI13475.1|  262|Homo sapiens cerebellar
           degeneration-related protein 1, 34kDa protein.
          Length = 262

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 6/25 (24%), Positives = 23/25 (92%)
 Frame = -3

Query: 516 QKVPIIKEVPVIKELPIIREVPVVK 442
           + VP+++++P+++++P++ +VP+++
Sbjct: 11  EDVPLLEDIPLLEDVPLLEDVPLLE 35


>BC113472-1|AAI13473.1|  262|Homo sapiens cerebellar
           degeneration-related protein 1, 34kDa protein.
          Length = 262

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 6/25 (24%), Positives = 23/25 (92%)
 Frame = -3

Query: 516 QKVPIIKEVPVIKELPIIREVPVVK 442
           + VP+++++P+++++P++ +VP+++
Sbjct: 11  EDVPLLEDIPLLEDVPLLEDVPLLE 35


>AY065987-1|AAL49979.1|  170|Homo sapiens potassium voltage-gated
           channel-like protein protein.
          Length = 170

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 110 NGNE-FYFIDLLAFYAITLTRIIICMLVSRKQPFSYKKQILILDWK 244
           NGNE FY + +++FY I L  I++  + S+++    KK  L+L +K
Sbjct: 32  NGNEYFYILVVMSFYGIFLIGIVLGYMKSKRRE---KKSSLLLLYK 74


>AL078639-1|CAI42370.1|  262|Homo sapiens cerebellar
           degeneration-related protein 1, 34kDa protein.
          Length = 262

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 6/25 (24%), Positives = 23/25 (92%)
 Frame = -3

Query: 516 QKVPIIKEVPVIKELPIIREVPVVK 442
           + VP+++++P+++++P++ +VP+++
Sbjct: 11  EDVPLLEDIPLLEDVPLLEDVPLLE 35


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,853,679
Number of Sequences: 237096
Number of extensions: 1217472
Number of successful extensions: 1586
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)