Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328G12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    28   0.97 
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    27   1.7  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    25   5.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   6.8  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.0  

>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 199 KTLPLSFSKRLILIGTNGSFLVLLTSETDLILKDKNSSQSRTQFDPYKV 345
           KT+   F+  L+ I   G F+  L S  D+IL++K+S  +   + P K+
Sbjct: 153 KTVVCGFANGLV-IRVEGDFVRDLGSRQDIILREKDSITNLILYSPKKL 200


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 125 SEFSAIFTSKTLILHNKRSFNEWATVG 45
           ++ S  F+ KT+  HN R F  W  VG
Sbjct: 4   AKLSIAFSKKTIKTHNCRLFQRWLHVG 30


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -1

Query: 188 PNVCYSEDPNVHYMDLFNVINSEFSAIFTSKTLILHNKRSFNEW 57
           PNVC    PN  +  +F  +++  S+I +  +    +     EW
Sbjct: 137 PNVCVVSTPNFEFNTIFEKLSTLTSSISSRTSTNFRHPEHVFEW 180


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 278 SDVNSTRKLPFVPINIRRLEKLRGKVLAKIPNVCYSE 168
           SD++STR+LP +P+      K+   ++ +      SE
Sbjct: 258 SDISSTRQLPKIPVQDYASGKISSPLITRTHRRAQSE 294


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 101 SKTLILHNKRSFNEWATVGIHKSRQRLYDL 12
           + T +LH +RS     +   H SR   YDL
Sbjct: 147 ASTSLLHPRRSTTSLLSSSAHHSRSSYYDL 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,146
Number of Sequences: 5004
Number of extensions: 35283
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)