Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328G12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0022 + 27733247-27733935,27735722-27735981,27736213-277364...    31   0.42 
09_04_0743 - 19862847-19864745,19865875-19866912                       28   4.0  
11_01_0605 + 4821363-4823246                                           27   6.9  
04_03_0643 + 18328807-18331969,18332560-18332627                       27   6.9  
02_04_0538 + 23739830-23740126,23740205-23740261,23740344-237404...    27   9.1  

>11_08_0022 +
           27733247-27733935,27735722-27735981,27736213-27736404,
           27737695-27738686
          Length = 710

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 11/46 (23%), Positives = 27/46 (58%)
 Frame = +2

Query: 299 IRIRVKVEHSLTHTKLKNVFVLTFVTKIVLKKNYILTLINCCLKTK 436
           + ++  +E S++ T+ K+ FV     ++ +  + ++ LI CCL+ +
Sbjct: 455 VAVKYSIEKSISRTRGKDEFVKEITVQLQVSHDNLVCLIGCCLEVE 500


>09_04_0743 - 19862847-19864745,19865875-19866912
          Length = 978

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -1

Query: 353 RFLTLYGSNCVRL*LEFLSFKIKSVSDVNSTRKLPFVPINIRRLEKLR 210
           R+L L G+N  RL     + K     DV  T K+  +P    +LEKLR
Sbjct: 607 RYLGLRGTNISRLPSSLQNLKCLETLDVQDT-KVTHLPDGTAKLEKLR 653


>11_01_0605 + 4821363-4823246
          Length = 627

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -1

Query: 311 LEFLSFKIKSVSDVNSTRKLPFVPINIRRLEKLRGKVLAKIPNVCYSEDPNVHYMDL-FN 135
           L F   +I  +S+ N T K+P   +N+  L +  G     + ++      N+  +DL +N
Sbjct: 247 LSFPKLRILVLSENNLTGKIPRSLLNVTTLFRFGGNQNNFVGSIPQGITRNIRMLDLSYN 306

Query: 134 VINSEF-SAIFTSKTL 90
           ++N +  S + +  TL
Sbjct: 307 MLNGDIPSELLSPDTL 322


>04_03_0643 + 18328807-18331969,18332560-18332627
          Length = 1076

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 236 NIRRLEKLRGKVLAKIPNVCYSEDPNVHYMDLFNVINS 123
           N+  LE LR      + ++C SE  N+H + +F+ +++
Sbjct: 873 NLPSLENLRIDNCGSLTSICVSEASNIHTVGVFSSLST 910


>02_04_0538 +
           23739830-23740126,23740205-23740261,23740344-23740441,
           23740565-23740640,23741316-23741345,23741833-23741961,
           23742077-23742123,23742477-23742531,23742939-23743038,
           23743568-23743674,23743760-23743906,23744232-23744378,
           23744473-23744526,23744873-23744914
          Length = 461

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 334 GQTVFDFDSNSYLLKLNLFQMLIVQESYRLFL-LILDVWRSL 212
           G T FD DS S  + L      +   S RLF  +IL +WR L
Sbjct: 217 GATWFDLDSKSGQICLRFSSAKVFLTSERLFTKVILVLWRGL 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,500,343
Number of Sequences: 37544
Number of extensions: 166796
Number of successful extensions: 328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)