Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328G11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.14
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 30 0.24
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 30 0.24
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 28 0.73
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.97
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 1.3
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 27 1.3
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 1.7
SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa... 27 2.2
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 26 3.9
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 25 5.2
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 5.2
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 25 9.0
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 9.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.0
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 25 9.0
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 30.7 bits (66), Expect = 0.14
Identities = 24/72 (33%), Positives = 40/72 (55%)
Frame = -3
Query: 480 STVLSTASCFTAISSVFSANSSICRSSFSIWTGSSFLLARYCSMPSIQADRSWYVSTRCR 301
S++LS++S TAISS S++S + SSF+ SSF+ + S + S +++
Sbjct: 46 SSMLSSSSA-TAISSS-SSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSS 103
Query: 300 SPLRELSNRSPT 265
+ L S+ SPT
Sbjct: 104 ATLTSSSSASPT 115
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 29.9 bits (64), Expect = 0.24
Identities = 12/63 (19%), Positives = 32/63 (50%)
Frame = +2
Query: 275 LLESSRKGLRHLVLTYQDLSAWMDGMEQYLAKRKLLPVHMEKLLRQMDELAEKTEEIAVK 454
LLE S +G+ + + + WM ++ +++ +E+++ ++ E EE ++K
Sbjct: 478 LLEESAQGIEYTDQKLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRSLEEESIK 537
Query: 455 QEA 463
+ +
Sbjct: 538 ESS 540
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 29.9 bits (64), Expect = 0.24
Identities = 28/143 (19%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Frame = +2
Query: 20 VSERKVKSLE-LVPTDEEKIQQKIREHKALHDDILSKQPAFKQLTETASTL---MGLVGD 187
V ++ SLE V +EK + E +++ +D+ +KQ L++ +STL + +
Sbjct: 899 VVHERLSSLENQVTIADEKYEFLYAEKQSIEEDLANKQTEISYLSDLSSTLEKKLSSIKK 958
Query: 188 DEATALADRLQAATDRYQTLVDHNLNVGDLLESSRKGLRHLVLTYQDLSAWMDGM-EQYL 364
DE T + + D + D+ + L + K + L ++L+ + + ++ L
Sbjct: 959 DEQTISSKYKELEKDYLNIMADYQ-HSSQHLSNLEKAINEKNLNIRELNEKLMRLDDELL 1017
Query: 365 AKRKLLPVHMEKLLRQMDELAEK 433
K++ +++L + L ++
Sbjct: 1018 LKQRSYDTKVQELREENASLKDQ 1040
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 28.3 bits (60), Expect = 0.73
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Frame = +2
Query: 26 ERKVKSLELVPTDEEKIQQKIREHKALHDDILSKQPA----FKQLTETASTLMGLVGDDE 193
+ ++K L L+P D+E+ + E L+ ++L K K +++ +L +VGD E
Sbjct: 367 KEQLKGLRLLPEDKEEYEGLRSEADKLNSNLLFKLQTLNRNIKVTSQSKDSLTSIVGDLE 426
Query: 194 A--TALADRLQAA-TDRYQTLVDHNLNVGDLLESSRKGLRHLVLTYQDL 331
+ +L + + + T+R L N + + LE + + LTY +L
Sbjct: 427 SKIKSLHESVSSLDTERADLLAKINEKI-ESLELEKHDQQKKRLTYSEL 474
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 0.97
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -3
Query: 480 STVLSTASCFTAISSVFSANSSICRSSFSIW-TGSSFLLARYCSMPSIQADRSWYVSTRC 304
ST+ S++S ++ SS S++S SSFS T SS ++ S PS + S S++
Sbjct: 305 STISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKS 364
Query: 303 RS 298
S
Sbjct: 365 SS 366
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Frame = +2
Query: 32 KVKSLELVPTDEEKIQQKIREHKAL---HDDILS 124
++ LE + +E K+Q+K+ EH++L +DILS
Sbjct: 639 QLSQLENLQNEERKLQEKVNEHESLLSRTNDILS 672
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +2
Query: 23 SERKVKSLELVPTDEEKIQQKIREHKALHDDILSKQPAFK 142
++R + +VP ++K K+ E+K +++I+ + PA +
Sbjct: 114 TKRPTSCVMIVPGGKKKDMSKVEEYKESYEEIIKEVPALE 153
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 410 QMDELAEKTEEIAVKQEAVDSTVDSG 487
Q DELAEK+E +AV E S G
Sbjct: 37 QNDELAEKSENLAVSSEKTTSKKKKG 62
>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 29 RKVKSLELVPTDEEKIQQKIREHKALHDDILSKQPAF 139
RK+K LE D +++Q+ + EH+ ++ + + F
Sbjct: 19 RKIKQLENKTRDSQEVQKNVIEHRNYDPEVQAPKMGF 55
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 275 DRLRSNYDPPEFGICRW 225
D L+SN++ PEF + RW
Sbjct: 440 DCLKSNFENPEFVLSRW 456
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 430 LSQFVHLPEQFLHMDREQLPLGEVLLHAVHPG 335
L Q HL + F H DRE++P E ++HA G
Sbjct: 36 LLQDSHLIDVFQHFDRERIP--ERVVHAKGSG 65
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 5.2
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 65 EEKIQQKIREHKALHDDILSKQPAFKQLTETASTLMGLVGDDEATALADRLQAATDRYQT 244
E + IR+ A HD+ILS+ +QL + A ++ L G E + L YQ
Sbjct: 366 EVVVDSAIRD-LAYHDEILSRMKLNEQLNKDAVLIIHLGGTFEGK--KETLDRFRKNYQR 422
Query: 245 LVD 253
L D
Sbjct: 423 LSD 425
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +2
Query: 188 DEATALADRLQAATDRYQTLVDHNLNVGDLLESSRKGLR 304
D A LADRL AA + L N+N+G SRK R
Sbjct: 153 DRAVDLADRLLAAYNTSTGLPRSNVNLG--TRKSRKRTR 189
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = -3
Query: 468 STASCFTAISSVFSANSSICRSSFSIWTGSSFLLARYCSMPSIQADRSWYVST 310
S++S A S+ + +SS SS ++ + S ++ S+PSI + S VST
Sbjct: 111 SSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVST 163
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 9.0
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -3
Query: 480 STVLSTASCFTAISSVFSANSSICRSSFSIWTGS-SFLLARYCSMPSIQADRSWYVSTRC 304
ST ++AS T +SSV SANS+ S+ S S + A S + + S ++
Sbjct: 313 STTTTSASS-TPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSAS 371
Query: 303 RSPLRELSNRSPT 265
+PL +++ S T
Sbjct: 372 STPLTSVNSTSAT 384
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/34 (23%), Positives = 20/34 (58%)
Frame = +2
Query: 215 LQAATDRYQTLVDHNLNVGDLLESSRKGLRHLVL 316
++ DRYQ ++D N+N +++ + + L++
Sbjct: 21 IEGNNDRYQVILDKNVNAKQFVKTCWRNKKPLIV 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,914
Number of Sequences: 5004
Number of extensions: 33373
Number of successful extensions: 140
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -