Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328G09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    26   3.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   5.2  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   6.8  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   6.8  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   9.0  
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    25   9.0  

>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 503 NELYTKIIY--VHI*YNNANVFTIQKLGTKIE*INLIYFYNNTID 375
           NE ++  IY  VH    +  + T+Q  GT +  ++  Y+Y + ID
Sbjct: 156 NEPFSPEIYEAVHALTLDTKLRTVQSCGTNLSLLDNFYYYQDHID 200


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 220  PYNVFSYNAISVPSITR 270
            PYNVF Y A  VP + R
Sbjct: 1074 PYNVFIYTAFVVPRLDR 1090


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 217 YPYNVFSYNAISVPSITRAFPHITLGFVTLYFCTVKFNICTVHN 348
           Y   ++ Y+ +S+P ITRA     L  +T+    V   +C   N
Sbjct: 611 YSSKMYKYDRVSIPVITRASSSRNL-LITMNCLRVLEKVCKYSN 653


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 432 FLNCKNIGIIVLYMYIYNF 488
           FLNC    I+ +Y+ I+NF
Sbjct: 420 FLNCLFAPIVAIYLVIHNF 438


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 365 CTLCQLCCYKNKLN*F-IQFLFLVFE 439
           C+LC LC Y   LN    Q LF +F+
Sbjct: 466 CSLCYLCLYAQNLNSHSSQSLFELFQ 491


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 274 FPHITLGFVTLYFCTVKFNIC 336
           FP   +      FCT+KFN C
Sbjct: 274 FPDFPIDQAVESFCTIKFNSC 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,181
Number of Sequences: 5004
Number of extensions: 46826
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)