Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328G09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.7  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
 Frame = -3

Query: 111 YGTRAVVSSGDHW*SLNASWA---VT-LRHEVFQPG 16
           Y  R++V+S   + + ++++    VT LR+EVFQPG
Sbjct: 445 YNCRSLVASVPFFANADSNFVSDVVTKLRYEVFQPG 480


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
 Frame = -3

Query: 111 YGTRAVVSSGDHW*SLNASWA---VT-LRHEVFQPG 16
           Y  R++V+S   + + ++++    VT LR+EVFQPG
Sbjct: 413 YNCRSLVASVPFFANADSNFVSDVVTKLRYEVFQPG 448


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 37  PQGNGPTGVK*SPVITGAHHSPSSIATLKP 126
           P G+G +     P+ T +  S S+I TL+P
Sbjct: 385 PIGSGGSFPSLYPMATTSPQSQSTIQTLRP 414


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 517 YDPHITSYIQKLYMYIYNTI 458
           YD ++     KL MY+Y +I
Sbjct: 493 YDQNVWVLSNKLAMYLYGSI 512


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,375
Number of Sequences: 438
Number of extensions: 4183
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)