Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328G08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S... 106 2e-24
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p... 50 2e-07
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 40 2e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 2.2
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 26 3.0
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 3.0
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 3.9
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 25 5.2
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 25 5.2
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 6.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 6.8
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 9.0
>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 116
Score = 106 bits (255), Expect = 2e-24
Identities = 47/66 (71%), Positives = 58/66 (87%)
Frame = +2
Query: 323 LPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTINGXDV 502
LPIAN+A+IMK A+PEN KI+K+A++CVQ+C+SEFISFVT EAS++C EKRKTI G DV
Sbjct: 12 LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDV 71
Query: 503 LFALNT 520
L ALNT
Sbjct: 72 LLALNT 77
>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 161
Score = 50.0 bits (114), Expect = 2e-07
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +2
Query: 293 NAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVE 472
N + + LP A + K++ +P + K+AR+ + EC EFI V+SEA++ C+ E
Sbjct: 2 NDGFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKE 61
Query: 473 KRKTINGXDVLFAL 514
+KTI ++ AL
Sbjct: 62 AKKTIAAEHIIKAL 75
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 39.9 bits (89), Expect = 2e-04
Identities = 23/77 (29%), Positives = 39/77 (50%)
Frame = +2
Query: 287 KSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCK 466
KS D LP + I +++K +PE + K+A + + + F+SF+TS + +
Sbjct: 5 KSKETSELDDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIAT 64
Query: 467 VEKRKTINGXDVLFALN 517
RK + DVL AL+
Sbjct: 65 NNNRKILMPQDVLNALD 81
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 203 NGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQD 316
NG V D T VV S ED+ N ++ N P+ +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASE 316
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = -1
Query: 287 YSQSPSCFHLLTHHQN*QQMCHPLPKIHCPISL 189
Y P C TH N +P IH P+ L
Sbjct: 127 YDPRPGCLKFTTHEINVSYTDTSIPVIHIPVQL 159
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 20 RMIQRR*VLPSSLNTQFCKHYVTLSSKSSTHFLSVNY 130
+ +R V P++ Q C YVT+ S S+H++S Y
Sbjct: 34 KFAKRSEVTPNTSLAQ-CPKYVTVYSSGSSHYISTIY 69
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 293 NAPLREQDRFLPIA-NIAKIMKRAIPENGKIAKDARECVQEC 415
+ P E D I ++A + +IP+N KI+ AR+ +++C
Sbjct: 1245 STPWSEMDNEWAIMYHVAAMHTPSIPQNEKISSLARDFIEQC 1286
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 188 LVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSK 289
L NG+ V +D F +DV E+E + D+ K
Sbjct: 118 LAEQPNGYFVLNDIFRFLREDVEEEEESPDAVEK 151
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 236 VNSDDVLEDENNSDSGSKSNAPLREQDRFL 325
V S +L+ E+NS++ + + P +QDR L
Sbjct: 31 VISSKILQFEDNSETSLRHDLPKYDQDRLL 60
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 200 DNGFLVADDTFVVNSDDVLEDENNS 274
D L ++D V NSDD++ED +N+
Sbjct: 355 DGEDLESEDEEVDNSDDIVEDGDNA 379
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Frame = +2
Query: 329 IANIAKIMKRAIPENGKI------AKDARECVQECIS 421
I N +K++++ P N ++ K+A EC+QE I+
Sbjct: 3314 ICNYSKVLEKLEPLNSEVDRLKLEQKNAEECIQETIA 3350
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = +2
Query: 221 DDTFVVNSDDVLEDENNSD 277
DD+F+V++D+ ++D + SD
Sbjct: 1467 DDSFIVDNDEDVDDYDESD 1485
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,966
Number of Sequences: 5004
Number of extensions: 37663
Number of successful extensions: 108
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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