Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328G07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0088 + 1087807-1088282,1088752-1088974                           29   2.3  
02_02_0355 + 9312814-9313650                                           28   4.0  
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534...    28   4.0  
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666...    28   5.2  
04_01_0226 + 2842897-2842921,2843049-2843155,2843426-2843494,285...    27   6.9  
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392...    27   9.1  
01_06_0197 + 27416724-27417119                                         27   9.1  

>10_01_0088 + 1087807-1088282,1088752-1088974
          Length = 232

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -3

Query: 510 GNCHKGCWRNARG--SGCGAGAAW 445
           G   +GCWR  RG   G G G AW
Sbjct: 109 GGRWRGCWRGRRGCRRGSGGGGAW 132


>02_02_0355 + 9312814-9313650
          Length = 278

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 489 WRNARGSGCGAGAAWSTSAGC 427
           WR  RG GC AG    T+  C
Sbjct: 217 WRRGRGGGCDAGGGDGTAGRC 237


>02_01_0714 +
           5339408-5340020,5340117-5340319,5340408-5340605,
           5340703-5340774,5341197-5341292,5341828-5341907,
           5341993-5342068,5342152-5342362,5342562-5342755,
           5342834-5342939,5343037-5343126,5343470-5344206
          Length = 891

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -3

Query: 489 WRNARGSGCGAGAAWSTSAGCTEAECS 409
           +RN RGSG GAGA  + S G   AE S
Sbjct: 116 YRNLRGSGSGAGAI-AASGGALLAEAS 141


>11_06_0425 -
           23365108-23366028,23366182-23366340,23366445-23366640,
           23366995-23367527,23367817-23368272,23368507-23368758,
           23368890-23369007,23369836-23369993
          Length = 930

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 516 RRGNCHKGCWRNARGSGCGAGAAWSTSAGCTEAECS 409
           + G C  GC     G GCGA A   +S     A+C+
Sbjct: 757 KSGGCGSGCGGGCGGGGCGAMAV-ESSKDDVHAKCA 791


>04_01_0226 +
           2842897-2842921,2843049-2843155,2843426-2843494,
           2850676-2852745
          Length = 756

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 195 IKLIITII-CCYRLIAHITVRRNAREDRVTRAFSCAIGD*NFIEK 64
           + LI  +I  CY +  HI VRR A   RV      A+G   + E+
Sbjct: 152 LNLIFQVIGACYVVYKHIIVRREATILRVATGLISAVGVVKYCER 196


>03_01_0522 -
           3919120-3919696,3919835-3919919,3919955-3919985,
           3920078-3920158,3920271-3920338,3920645-3920698,
           3921023-3922379
          Length = 750

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 409 LPLTQLAVDDAYCHHSTVVPNHCFKRSVNARIIENTGLDHGQE 281
           +P  Q+      CHH TV+P    ++ V A  +++  LD+G E
Sbjct: 433 IPFVQMFRSCVLCHHLTVLPETDSEQLVQA--LKDDELDNGPE 473


>01_06_0197 + 27416724-27417119
          Length = 131

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 486 RNARGSGCGAGAAWSTSAG 430
           R  RG GCG+G  W+TS G
Sbjct: 78  RGTRGDGCGSG--WTTSMG 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,733,078
Number of Sequences: 37544
Number of extensions: 259303
Number of successful extensions: 842
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)