Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328G07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = -3

Query: 519  QRRGNCHKGCWRNARGSG--CGAGAAWSTSAGCTEAECSS 406
            Q++ NC  GC     G G  CG G     S G     CSS
Sbjct: 2125 QQQNNCGGGCGGGCSGGGNSCGGGCNSGGSCGGGGGGCSS 2164


>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = -3

Query: 426  TEAECSSL--LRSLLWTMRIAIIVPLFPTIVSKGPLTQE*SKTLG--WITGKKFQSDSHN 259
            T+++ SSL  +R   + +R+ +        V    +T E  + +   W++G+K  SD H 
Sbjct: 2224 TQSDVSSLKTMRFPPYAVRLCMEAVCILLGVKPAKITNEIGEVVNDYWVSGQKLLSDIHF 2283

Query: 258  ISKTQFNSLTAVSRSNVTM 202
            ++K +  +   VS+  V +
Sbjct: 2284 LAKIRSFARDTVSKKTVKL 2302


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = -3

Query: 426  TEAECSSL--LRSLLWTMRIAIIVPLFPTIVSKGPLTQE*SKTLG--WITGKKFQSDSHN 259
            T+++ SSL  +R   + +R+ +        V    +T E  + +   W++G+K  SD H 
Sbjct: 2224 TQSDVSSLKTMRFPPYAVRLCMEAVCILLGVKPAKITNEIGEVVNDYWVSGQKLLSDIHF 2283

Query: 258  ISKTQFNSLTAVSRSNVTM 202
            ++K +  +   VS+  V +
Sbjct: 2284 LAKIRSFARDTVSKKTVKL 2302


>Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical
           protein C33G3.4 protein.
          Length = 900

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 309 KTLGWITGKKFQSDSHNISKTQF 241
           K   WI    F+SD  NI+KT+F
Sbjct: 358 KGTNWIPVSMFRSDRENIAKTEF 380


>U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical
           protein B0304.4 protein.
          Length = 128

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 129 AREDRVTRAFSCAIGD*NFIEKCGRQVPSKALA 31
           A  D   R  S AIG  NF+ KC ++ P  +L+
Sbjct: 47  ANADIKNRVCSAAIGRVNFVSKCLKKFPEVSLS 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,086,033
Number of Sequences: 27780
Number of extensions: 203017
Number of successful extensions: 625
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)