Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328G06f
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   1.7  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   2.9  
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S...    24   5.1  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    24   5.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   6.7  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    24   6.7  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   6.7  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      23   8.8  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    23   8.8  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    23   8.8  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    23   8.8  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    23   8.8  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 QTKTFPLNISN*VQIQTPPHSVRDS 86
           Q  +FPL   N  Q + P HS+RD+
Sbjct: 501 QPHSFPLRKQNVAQSEFPKHSLRDN 525


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -1

Query: 195  SRLLSIQSLKLYKQKPFRLTFPTESKYRHHR--TAYEIVLIRNTNVARLSNYQNARIVVF 22
            S +  +Q+    K KP  L   TES+ + +R     E++ ++  + ARL   + + ++  
Sbjct: 1125 SAIAELQAKSSIKSKPLTLKTATESEIKGYRDQIQLEVLNLKPDSEARLQAIERSELLQK 1184

Query: 21   RR 16
            +R
Sbjct: 1185 KR 1186


>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 213 IPTRLGSVKEVSAP-DMRAPGELVRARVREGG 305
           + TR  +  EV++P +   PG +V  R R+GG
Sbjct: 105 LTTRQLANPEVTSPREFNRPGHIVPLRARDGG 136


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 74  FRIKTISYAVRWCLYLDSV 130
           F I +++ A RWC +LD++
Sbjct: 351 FYIPSLNPAPRWCSFLDNI 369


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 50   LDKRATFVFRIKTISYAVRWCLYLDSVGNVK 142
            L+    FVF + T+ Y    C YLD    +K
Sbjct: 2492 LENITGFVFTVPTMEYRNEVCSYLDLAMKLK 2522


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 72  YFVLRLSRTLCGGVCIWTQLE---MLSGKVFVCIVLVTVWIKADCASLPFIPTRLGSVKE 242
           Y+ LRL R   G   ++  L+     S K+F C V+ T W+  +   LP    R  S + 
Sbjct: 264 YWQLRLER---GYTQVYADLQNRLCTSSKLFGCPVVCTNWLLNNKQHLPIQCKRFRSERR 320

Query: 243 VSA 251
            +A
Sbjct: 321 ANA 323


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 289 LARTSSPGALISGALTSLTLPNLVGMNGRLAQSAFIHT--VTKTIQTKT 149
           ++   + GA+  GA+  +T    + +N  +A   FI    +  +I+TKT
Sbjct: 448 ISAADTVGAICGGAIFDITTVGFIALNLGIAVLVFIQLLFLWNSIKTKT 496


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +2

Query: 50  LDKRATFVFRIKTISYAVRWCLYLDSVGNVKRKGFCLYS 166
           L KR    F  +T++Y    C++       + +G CL++
Sbjct: 242 LQKREDLYFSSRTLAYVFGGCMHSLETIEGEEEGECLFN 280


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 272 TRGSHIRCADFFDAPQSRWNER*TGAVGFYPYSH*NYTNKNLS 144
           T  S +  ++ FD+  + +N   TG    Y +   +YT  N S
Sbjct: 316 TPSSAVTLSNGFDSQSNAYNNSGTGPPMLYKFPQRSYTAPNTS 358


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 141 SGKVFVCIVLVTVWIKADCASLPFIPTR-LGSVKEVSAPDM 260
           SGK+ V   L+T+W K    +L F  TR +  + E+   D+
Sbjct: 624 SGKLKVIRALLTLWKKQGHRTLLFSQTRQMLDILEIGLKDL 664


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 313 AVAPPSRTLARTSSP 269
           +V PPS++LART  P
Sbjct: 200 SVLPPSKSLARTGLP 214


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -2

Query: 275 LTRGSHIRCADFFDAPQSRWNE----R*TGAVGFY 183
           L R S I CA +F   +SR+NE    R T  V FY
Sbjct: 3   LGRSSWICCAKYFVNTKSRFNEILPPRFTLIVSFY 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,466,486
Number of Sequences: 5004
Number of extensions: 27938
Number of successful extensions: 85
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)