Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328G06f
(327 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0503 - 22779025-22779397,22779602-22779627 28 2.0
01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296 27 2.6
10_07_0191 + 13934410-13934940 27 4.6
04_04_1658 - 35119623-35119754,35121033-35121121,35121205-351215... 27 4.6
04_03_0606 + 17939606-17939704,17939836-17940094,17940256-179404... 27 4.6
11_06_0701 + 26407055-26407597,26407794-26409644 26 6.1
07_01_1010 + 8561656-8561764,8563666-8563919,8564309-8564331,856... 26 6.1
11_06_0207 + 21214631-21216121 26 8.0
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 26 8.0
10_08_1022 + 22337332-22339398 26 8.0
02_01_0740 - 5511434-5511547,5511952-5512023,5512106-5512300,551... 26 8.0
>01_05_0503 - 22779025-22779397,22779602-22779627
Length = 132
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 165 LYKQKPFRLTFPTESKYRHHRTAYEIVLIRNTNVARLSN 49
LYK + ++L + E+K+R+ TA IR + LSN
Sbjct: 42 LYKSQEYKLHYTLETKHRNRNTANSKDGIRMAAMENLSN 80
>01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296
Length = 416
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 309 WHPLRGPSLGPAHPGLSYPVR 247
W+PL G L P HPG P R
Sbjct: 135 WNPLLGRLLPPLHPGYKPPER 155
>10_07_0191 + 13934410-13934940
Length = 176
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 316 AAVAPPSRTLARTSSPGALISGALTSLTLPNL 221
AA APP T A +SPG+ + T+L L +L
Sbjct: 92 AAAAPPEATAAAAASPGSPSTCRRTALQLLDL 123
>04_04_1658 - 35119623-35119754,35121033-35121121,35121205-35121599,
35122009-35122091,35122163-35124184,35124859-35124927,
35125050-35125130,35125215-35125308,35125435-35125499,
35125961-35126038,35126115-35126360
Length = 1117
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 283 ERGSAKGVPPPP 318
+RG AKG PPPP
Sbjct: 994 QRGKAKGAPPPP 1005
>04_03_0606 +
17939606-17939704,17939836-17940094,17940256-17940424,
17940525-17940678,17942377-17942577,17946746-17946958,
17947103-17947375,17947481-17947678,17948340-17948609,
17949710-17949910,17950152-17950427
Length = 770
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -2
Query: 317 GGGGTPFADP-RSDQLTRGSHIRCADFFDA 231
GGGGTPF P SD G R + DA
Sbjct: 729 GGGGTPFTAPGESDGCIVGFFARAGCYLDA 758
>11_06_0701 + 26407055-26407597,26407794-26409644
Length = 797
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 139 NISN*VQIQTPPHSVRDSLNTKYERCSF 56
N+ N ++ TPPH++RD + + C F
Sbjct: 603 NVENIFEMLTPPHNLRDLVIGYFFGCRF 630
>07_01_1010 +
8561656-8561764,8563666-8563919,8564309-8564331,
8564926-8564962,8565503-8565985
Length = 301
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 317 GGGGTPFADPRSDQLTRGSHIRCA 246
GG GTP DP + TRG H R A
Sbjct: 73 GGSGTPVVDPH-NVATRGHHHRGA 95
>11_06_0207 + 21214631-21216121
Length = 496
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 201 WRSRLLSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIV 85
WRS S++ + YKQ+ L + TES Y +V
Sbjct: 86 WRSAYTSLRDMGQYKQQTPCLLYTTESSGEKVSCLYSLV 124
>11_06_0151 - 20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 317 GGGGTPFADPRSDQLTRGSHIRCADFFD 234
GGG A+ SD+ + S ADFFD
Sbjct: 1195 GGGAAAAANASSDEHRKTSPATAADFFD 1222
>10_08_1022 + 22337332-22339398
Length = 688
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 307 APPSRTLARTSSPGALISGALTSLT 233
APP+ T + T++PG+L S +LT
Sbjct: 386 APPAATASLTTAPGSLFSQHTPTLT 410
>02_01_0740 -
5511434-5511547,5511952-5512023,5512106-5512300,
5512408-5512611,5512690-5512848,5513144-5513249,
5513387-5513554,5513644-5513834,5514410-5514634,
5514818-5514935,5515023-5515195,5515280-5515327,
5515484-5515589,5515697-5515802,5516211-5516332,
5516661-5516741,5516844-5516934,5517036-5517132,
5517287-5517919
Length = 1002
Score = 25.8 bits (54), Expect = 8.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 262 EPRVSWSERGSAKGVPPPP 318
E +SW ++G+ PPPP
Sbjct: 9 ESAISWIKQGTGSPAPPPP 27
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,248,150
Number of Sequences: 37544
Number of extensions: 202942
Number of successful extensions: 624
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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