Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328G06f
         (327 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068708-11|AAC17757.1|  136|Caenorhabditis elegans Hypothetical...    31   0.26 
U80445-7|AAB37798.1|  368|Caenorhabditis elegans Hypothetical pr...    29   0.79 
U80437-6|AAB37621.1|  368|Caenorhabditis elegans Hypothetical pr...    29   0.79 
Z81031-4|CAF31468.2|  421|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z81031-3|CAF31467.1|  455|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z81031-2|CAF31464.1|  429|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z81031-1|CAB02718.4|  432|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AF539814-1|AAN16459.1|  421|Caenorhabditis elegans tyramine rece...    27   3.2  
AF539813-1|AAN16458.1|  444|Caenorhabditis elegans tyramine rece...    27   3.2  
L15347-1|AAA28142.1|  813|Caenorhabditis elegans raf proto-oncog...    26   5.6  
AY493414-1|AAR86713.1|  769|Caenorhabditis elegans LIN-45 isofor...    26   5.6  
AY493413-1|AAR86712.1|  813|Caenorhabditis elegans LIN-45 isofor...    26   5.6  
AY455928-1|AAR26307.1|  813|Caenorhabditis elegans LIN-45 protein.     26   5.6  
AF067609-9|AAP82661.1|  278|Caenorhabditis elegans Hypothetical ...    26   5.6  
AC024877-3|AAF60898.1|  760|Caenorhabditis elegans Phosphodieste...    26   5.6  
AC024204-7|AAM97982.1|  614|Caenorhabditis elegans Abnormal cell...    26   5.6  
AC024204-6|AAF36042.1|  813|Caenorhabditis elegans Abnormal cell...    26   5.6  
Z93397-8|CAB07716.2|  545|Caenorhabditis elegans Hypothetical pr...    26   7.4  
AL132904-27|CAC35854.1|  545|Caenorhabditis elegans Hypothetical...    26   7.4  
U39849-9|AAA81051.1|  180|Caenorhabditis elegans Skp1 related (u...    25   9.7  
AF440517-1|AAL34105.1|  180|Caenorhabditis elegans SKR-17 protein.     25   9.7  

>AF068708-11|AAC17757.1|  136|Caenorhabditis elegans Hypothetical
           protein C18G1.1 protein.
          Length = 136

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -1

Query: 186 LSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIVL 82
           +S+  LK Y +KP R    TE++ +H+RT + I+L
Sbjct: 45  ISLFPLKDYSRKPGRGPQRTEAEMKHYRTVFYIIL 79


>U80445-7|AAB37798.1|  368|Caenorhabditis elegans Hypothetical
           protein C50F2.5 protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 123 SKYRHHRTAYEIVLIRNTNVARLSNYQNARIVVF 22
           +KY    T  E+V+ +N++    SNY++ R++VF
Sbjct: 189 TKYELELTDSEVVIDKNSDDPNASNYKSHRLIVF 222


>U80437-6|AAB37621.1|  368|Caenorhabditis elegans Hypothetical
           protein C43E11.5 protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 123 SKYRHHRTAYEIVLIRNTNVARLSNYQNARIVVF 22
           +KY    T  E+V+ +N++    SNY++ R++VF
Sbjct: 189 TKYELELTDSEVVIDKNSDDPNASNYKSHRLIVF 222


>Z81031-4|CAF31468.2|  421|Caenorhabditis elegans Hypothetical
           protein C02D4.2f protein.
          Length = 421

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 153 FVCIVLVTVWIKADCASLP 209
           FVCIV+V VWI +   S+P
Sbjct: 163 FVCIVIVIVWILSMLISVP 181


>Z81031-3|CAF31467.1|  455|Caenorhabditis elegans Hypothetical
           protein C02D4.2e protein.
          Length = 455

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 153 FVCIVLVTVWIKADCASLP 209
           FVCIV+V VWI +   S+P
Sbjct: 174 FVCIVIVIVWILSMLISVP 192


>Z81031-2|CAF31464.1|  429|Caenorhabditis elegans Hypothetical
           protein C02D4.2b protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 153 FVCIVLVTVWIKADCASLP 209
           FVCIV+V VWI +   S+P
Sbjct: 171 FVCIVIVIVWILSMLISVP 189


>Z81031-1|CAB02718.4|  432|Caenorhabditis elegans Hypothetical
           protein C02D4.2a protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 153 FVCIVLVTVWIKADCASLP 209
           FVCIV+V VWI +   S+P
Sbjct: 174 FVCIVIVIVWILSMLISVP 192


>AF539814-1|AAN16459.1|  421|Caenorhabditis elegans tyramine
           receptor short isoformSER-2a protein.
          Length = 421

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 153 FVCIVLVTVWIKADCASLP 209
           FVCIV+V VWI +   S+P
Sbjct: 163 FVCIVIVIVWILSMLISVP 181


>AF539813-1|AAN16458.1|  444|Caenorhabditis elegans tyramine
           receptor long isoformSER-2 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 153 FVCIVLVTVWIKADCASLP 209
           FVCIV+V VWI +   S+P
Sbjct: 163 FVCIVIVIVWILSMLISVP 181


>L15347-1|AAA28142.1|  813|Caenorhabditis elegans raf proto-oncogene
           protein.
          Length = 813

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 22/65 (33%), Positives = 27/65 (41%)
 Frame = -3

Query: 325 CTQAAVAPPSRTLARTSSPGALISGALTSLTLPNLVGMNGRLAQSAFIHTVTKTIQTKTF 146
           CT      PS T +  S PG LI G  T    PN+ G       +A +HT+  T      
Sbjct: 382 CTPLGSNSPSSTCS--SPPGGLI-GQPTLGQSPNVSGSTTSSLVAAHLHTLPLTPPQSAP 438

Query: 145 PLNIS 131
           P  IS
Sbjct: 439 PQKIS 443


>AY493414-1|AAR86713.1|  769|Caenorhabditis elegans LIN-45 isoform 3
           protein.
          Length = 769

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 22/65 (33%), Positives = 27/65 (41%)
 Frame = -3

Query: 325 CTQAAVAPPSRTLARTSSPGALISGALTSLTLPNLVGMNGRLAQSAFIHTVTKTIQTKTF 146
           CT      PS T +  S PG LI G  T    PN+ G       +A +HT+  T      
Sbjct: 338 CTPLGSNSPSSTCS--SPPGGLI-GQPTLGQSPNVSGSTTSSLVAAHLHTLPLTPPQSAP 394

Query: 145 PLNIS 131
           P  IS
Sbjct: 395 PQKIS 399


>AY493413-1|AAR86712.1|  813|Caenorhabditis elegans LIN-45 isoform 2
           protein.
          Length = 813

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 22/65 (33%), Positives = 27/65 (41%)
 Frame = -3

Query: 325 CTQAAVAPPSRTLARTSSPGALISGALTSLTLPNLVGMNGRLAQSAFIHTVTKTIQTKTF 146
           CT      PS T +  S PG LI G  T    PN+ G       +A +HT+  T      
Sbjct: 382 CTPLGSNSPSSTCS--SPPGGLI-GQPTLGQSPNVSGSTTSSLVAAHLHTLPLTPPQSAP 438

Query: 145 PLNIS 131
           P  IS
Sbjct: 439 PQKIS 443


>AY455928-1|AAR26307.1|  813|Caenorhabditis elegans LIN-45 protein.
          Length = 813

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 22/65 (33%), Positives = 27/65 (41%)
 Frame = -3

Query: 325 CTQAAVAPPSRTLARTSSPGALISGALTSLTLPNLVGMNGRLAQSAFIHTVTKTIQTKTF 146
           CT      PS T +  S PG LI G  T    PN+ G       +A +HT+  T      
Sbjct: 382 CTPLGSNSPSSTCS--SPPGGLI-GQPTLGQSPNVSGSTTSSLVAAHLHTLPLTPPQSAP 438

Query: 145 PLNIS 131
           P  IS
Sbjct: 439 PQKIS 443


>AF067609-9|AAP82661.1|  278|Caenorhabditis elegans Hypothetical
           protein C23H5.2 protein.
          Length = 278

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 298 SRTLARTSSPGALISGALTSLTLPNLVGMNGRLAQSAFIHTVTKTIQTKTFP 143
           SR L   + PGA  +    SLTLP +   N R    + + TV+    T   P
Sbjct: 201 SRQLMFLAVPGAAAATMSQSLTLPAINNNNYRKGSDSRLSTVSALSATSVSP 252


>AC024877-3|AAF60898.1|  760|Caenorhabditis elegans
           Phosphodiesterase protein 6, isoforma protein.
          Length = 760

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 220 RDWGASKKSAHRI*EPRVSWSERGSAKGVP 309
           R+WG  ++ AHRI E     +     KG+P
Sbjct: 662 REWGLCQRWAHRIVEEYFEQTREEKEKGLP 691


>AC024204-7|AAM97982.1|  614|Caenorhabditis elegans Abnormal cell
           lineage protein 45,isoform b protein.
          Length = 614

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 22/65 (33%), Positives = 27/65 (41%)
 Frame = -3

Query: 325 CTQAAVAPPSRTLARTSSPGALISGALTSLTLPNLVGMNGRLAQSAFIHTVTKTIQTKTF 146
           CT      PS T +  S PG LI G  T    PN+ G       +A +HT+  T      
Sbjct: 424 CTPLGSNSPSSTCS--SPPGGLI-GQPTLGQSPNVSGSTTSSLVAAHLHTLPLTPPQSAP 480

Query: 145 PLNIS 131
           P  IS
Sbjct: 481 PQKIS 485


>AC024204-6|AAF36042.1|  813|Caenorhabditis elegans Abnormal cell
           lineage protein 45,isoform a protein.
          Length = 813

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 22/65 (33%), Positives = 27/65 (41%)
 Frame = -3

Query: 325 CTQAAVAPPSRTLARTSSPGALISGALTSLTLPNLVGMNGRLAQSAFIHTVTKTIQTKTF 146
           CT      PS T +  S PG LI G  T    PN+ G       +A +HT+  T      
Sbjct: 382 CTPLGSNSPSSTCS--SPPGGLI-GQPTLGQSPNVSGSTTSSLVAAHLHTLPLTPPQSAP 438

Query: 145 PLNIS 131
           P  IS
Sbjct: 439 PQKIS 443


>Z93397-8|CAB07716.2|  545|Caenorhabditis elegans Hypothetical
           protein ZC482.2 protein.
          Length = 545

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 87  VLIRNTNVARLSNYQNARIVVFRRTVAS 4
           + IRNTN+  LS  QN + + +   +AS
Sbjct: 256 IAIRNTNLQSLSFLQNLQTIEYNSDIAS 283


>AL132904-27|CAC35854.1|  545|Caenorhabditis elegans Hypothetical
           protein ZC482.2 protein.
          Length = 545

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 87  VLIRNTNVARLSNYQNARIVVFRRTVAS 4
           + IRNTN+  LS  QN + + +   +AS
Sbjct: 256 IAIRNTNLQSLSFLQNLQTIEYNSDIAS 283


>U39849-9|AAA81051.1|  180|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 17 protein.
          Length = 180

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 304 PPSRTLARTSSPGALISGALTSLTL 230
           PP R L  TSS G L+ G + +L L
Sbjct: 20  PPPRLLQLTSSDGHLLQGDIRALLL 44


>AF440517-1|AAL34105.1|  180|Caenorhabditis elegans SKR-17 protein.
          Length = 180

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 304 PPSRTLARTSSPGALISGALTSLTL 230
           PP R L  TSS G L+ G + +L L
Sbjct: 20  PPPRLLQLTSSDGHLLQGDIRALLL 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,320,993
Number of Sequences: 27780
Number of extensions: 163996
Number of successful extensions: 470
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)