Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328G05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   134   1e-32
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    81   7e-17
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    72   5e-14
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    26   3.9  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   9.0  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  134 bits (323), Expect = 1e-32
 Identities = 59/92 (64%), Positives = 71/92 (77%)
 Frame = +2

Query: 92  YPKSGQTVVVHYTGTLTNGKKFDSSRDRGXPFKFRIGKSEVIRGWDEGVAKMSVXERAKL 271
           +PK G  + +HYTGTLTNGKKFDSS DRG PF   IG  ++IRGWDEGV KMS+ E+AKL
Sbjct: 16  FPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKL 75

Query: 272 XCSPDYAYGQQXHPGVIPPXSTLIFDVELLRL 367
             +PDY YG +  PG+IPP STL+FDVELL +
Sbjct: 76  TITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 81.4 bits (192), Expect = 7e-17
 Identities = 42/89 (47%), Positives = 55/89 (61%)
 Frame = +2

Query: 101 SGQTVVVHYTGTLTNGKKFDSSRDRGXPFKFRIGKSEVIRGWDEGVAKMSVXERAKLXCS 280
           +G+ V + Y G L NGK FD +  +G PF F +G+ EVIRGWD GVA M      K+   
Sbjct: 274 NGKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIP 332

Query: 281 PDYAYGQQXHPGVIPPXSTLIFDVELLRL 367
              AYG Q  PG IP  STL+F+V+L+R+
Sbjct: 333 APMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 72.1 bits (169), Expect = 5e-14
 Identities = 39/88 (44%), Positives = 49/88 (55%)
 Frame = +2

Query: 98  KSGQTVVVHYTGTLTNGKKFDSSRDRGXPFKFRIGKSEVIRGWDEGVAKMSVXERAKLXC 277
           K  + V + Y G LTNGK FD +   G PF F +G  EVI+GWD G+  M V     +  
Sbjct: 274 KRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHI 332

Query: 278 SPDYAYGQQXHPGVIPPXSTLIFDVELL 361
               AYG +  PG IP  S L+FDV+LL
Sbjct: 333 PAAMAYGSKRLPG-IPANSDLVFDVKLL 359


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 176 GXPFKFRIGKSEVIRGWDEGVAKMSVXERAKLXCSPDYAY 295
           G  F  R  +S + R W   +  MSV   AKL    + AY
Sbjct: 176 GPAFSTR-AESNLYRSWGASIINMSVIPEAKLAREAEIAY 214


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 116 VVHYTGTLTNG-KKFDSSRDRGXPFKFRIGKSEV 214
           V H +   TN    + SSRD G PF  ++  +EV
Sbjct: 598 VYHISDDSTNSANSYMSSRDFGHPFVLQLSDNEV 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,431
Number of Sequences: 5004
Number of extensions: 30426
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)