Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328G04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    42   7e-05
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   5.2  
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    25   9.0  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 41.5 bits (93), Expect = 7e-05
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = +1

Query: 292 PLRRKSVPHLV--AVHXASMYAGIRPNLKIXTVXILLAGRHAGKRVVLVGILPSGLLLVT 465
           P  R++VP     AV    + A + P     TV ILLAGR  GKRVV++  L    L+VT
Sbjct: 29  PAYRENVPKKARKAVRPTKLRASLAPG----TVCILLAGRFRGKRVVVLSQL-EDTLVVT 83

Query: 466 GPFCIQFVP 492
           GP+ +  VP
Sbjct: 84  GPYKVNGVP 92


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 261 VPLKRRKSFYPTQEKIRASSGGRPXSKHVRRNPTQPED 374
           + LKR   +YP      +S   R  ++H++R+P    D
Sbjct: 90  IELKRFAVYYPDTSNALSSLRKRSNNQHMKRHPHHKRD 127


>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 459 SYWTFLHSIRARYP 500
           S WTFLH++ A +P
Sbjct: 85  STWTFLHAMAANFP 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,954
Number of Sequences: 5004
Number of extensions: 36657
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)