Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328G01f
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    29   0.40 
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    27   0.92 
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    27   0.92 
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    27   1.6  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    26   2.8  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   2.8  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   3.7  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   4.9  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   6.5  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    24   8.6  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    24   8.6  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    24   8.6  

>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +3

Query: 123 PEQSSNKLLANAFVEDDQHRLQWEFYSKEINFTEGSGKLEKSDKLQKMVKDGVPHSLRPQ 302
           P  SSN    N  + ++  +  W  Y K+      +  L ++   QK+V+ G+P++LR  
Sbjct: 172 PIASSN---TNGLINENNSK-SWIQYLKK---NGANFNLIQTPNFQKLVQSGIPNNLRAD 224

Query: 303 VWMHLCGA 326
           +W    G+
Sbjct: 225 IWETCSGS 232


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 252 KLQKMVKDGVPHSLRPQVWMHLCGA 326
           K +++VK+GVP   + +VW+   GA
Sbjct: 496 KFRELVKNGVPLCYKAKVWLECSGA 520


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 114 EDGPEQSSNKLLANAFVEDDQHRLQWEFYSKEINFTEGS 230
           E+  EQ  N+++A   VE DQ++   E    E+NF + S
Sbjct: 174 EESTEQVKNRMIALKDVEADQYQQLTELIVYELNFFKES 212


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 171 DQHRLQWEFYSKE--INFTEGSGKL--EKSDKLQKMVKDGVPHSLRPQVWMHLCG 323
           ++   +W+ + +E  I++   S  +   +S K Q+ ++ G+P   R   W +  G
Sbjct: 261 ERREQRWKLFLQENGIDYIHQSPSIFPSRSAKTQRFIRKGIPPEYRGNAWFYYSG 315


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -3

Query: 239 KLTTAFGKVNFFAVKLPLQSMLIIF---NKCI 153
           K+TTAFG  +F  ++  L S +++F   +KC+
Sbjct: 273 KITTAFGNCSFDEIERKLLSFVMLFENTDKCL 304


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 9   VPQDIMAKLAQPESEGHGGGLPDYSFDEFGFCIEEEDG 122
           +P    A+ A   SEG    + D   D++G  IE EDG
Sbjct: 307 LPSPTSARRASHLSEGKWDEIDDEDDDDWGSTIEFEDG 344


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +3

Query: 198 YSKEINFTEGSGKLEKSDKLQKMVKDGVPHSLRPQVWMHLCG-ANKKRASTEITYHEIVR 374
           +  E+   + S +L   + +  M++D    S  P+VW   CG  N K  +  I   E+  
Sbjct: 282 FENELQAEQTSVRLVAIETVGLMLQDNAIWSDYPRVWSAFCGRLNDKSVACRIKCIEVAS 341

Query: 375 ASSDDGFGT 401
            +  +   T
Sbjct: 342 NALQNSLAT 350


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 193 SFTAKKLTLPKAVVSLKNQINY 258
           S  + KLTLPK V+  KN ++Y
Sbjct: 95  SHVSIKLTLPKCVLRSKNGLHY 116


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +3

Query: 255 LQKMVKDGVPHSLRPQVWMHLCGANKKRAS-TEITY---HEIVRASSDDGFGT 401
           L+ +  +G+P   RP VW +L G     AS  E+T     +   A+ D  F T
Sbjct: 209 LRTLAWNGIPSEHRPIVWKYLLGYLPCNASRREVTLKRKRDEYNAAKDSCFNT 261


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/47 (19%), Positives = 24/47 (51%)
 Frame = +3

Query: 168 DDQHRLQWEFYSKEINFTEGSGKLEKSDKLQKMVKDGVPHSLRPQVW 308
           +D H L + +Y +  N  +G+ + +    + + V+D   +   P+++
Sbjct: 255 EDLHALAYTYYIRSRNMRQGAARCQARRLIPQKVRDASFYQGPPELY 301


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +1

Query: 208 KLTLPKAVVSLKNQINYRKWSKMVYHIHLGLKSGCIYVELTRNE 339
           ++T P+ V + + +  Y +W    +HI    + G +  ++  NE
Sbjct: 233 RITQPEGV-NFRIKGRYIEWQNFCFHIGFNYREGIVLSDVVFNE 275


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 303  VWMHLCGANKKRASTEITYHEIVRASSD 386
            V+MH  G    +A+  + YHE+++ S +
Sbjct: 1080 VYMHPSGVLFGKAAEWVIYHELIQTSKE 1107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,603
Number of Sequences: 5004
Number of extensions: 28443
Number of successful extensions: 83
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)