Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328G01f
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0271 - 15156737-15156868,15157134-15157235,15157342-151574...    46   2e-05
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971...    33   0.096
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794...    32   0.22 
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991...    28   2.7  
07_01_1011 + 8571297-8571517,8571943-8572148,8572219-8572334           27   4.8  
06_03_1102 + 27614560-27614685,27615154-27615639                       27   8.3  
05_01_0340 - 2677082-2678266                                           27   8.3  

>08_02_0271 -
           15156737-15156868,15157134-15157235,15157342-15157419,
           15157523-15157616,15157736-15157872,15157989-15158105,
           15158470-15158940
          Length = 376

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 19/43 (44%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
 Frame = +3

Query: 255 LQKMVKDGVPHSLRPQVWMHLCGANKKRASTEITYH-EIVRAS 380
           L+++++ GVP  LRP+VW+ + GA KKR++   TY+ E++RA+
Sbjct: 102 LRRLIRKGVPPVLRPKVWLSVSGAAKKRSTVPETYYDELIRAT 144


>03_02_0596 +
           9714022-9714065,9714799-9714868,9714978-9715883,
           9715973-9716146,9716260-9716373,9716975-9717033,
           9717170-9717236,9717305-9717356,9718070-9718488,
           9718786-9718847,9719305-9719374,9719730-9719831,
           9719933-9720063,9720492-9720606,9720792-9720827
          Length = 806

 Score = 33.1 bits (72), Expect = 0.096
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = +3

Query: 117 DGPEQSSNKLLANAFVEDDQHRLQWEFYSKEINFTEGSGKLEKSDKLQKMVKDGVPHSLR 296
           D  E+SSN       VE  Q R Q +  S  +    G       ++L+ +V+ GVP +LR
Sbjct: 283 DPAEESSNP----DKVEQAQDREQGDSASAALEGGNGESYFPWREELESLVRGGVPMALR 338

Query: 297 PQVWMHLCGANKKR 338
            ++W    G   ++
Sbjct: 339 GEMWQAFVGVGARK 352


>01_06_1257 -
           35778078-35778299,35778952-35779069,35779294-35779433,
           35779763-35779864,35779971-35780051,35780333-35780402,
           35781053-35781114,35781789-35782183,35782303-35782386,
           35782949-35783041,35783144-35783195,35783310-35783376,
           35783492-35783550,35784209-35784256,35784927-35785040,
           35785162-35785335,35785417-35785944,35786025-35786094,
           35786668-35786711
          Length = 840

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +3

Query: 249 DKLQKMVKDGVPHSLRPQVWMHLCGANKKRASTEITYHEIVRASSDD 389
           ++L+ +V+DG+P +LR ++W    G   +R      Y+E + A+ D+
Sbjct: 197 EELECLVRDGLPMALRGELWQAFVGIGARRVK---GYYESLLAADDE 240


>12_01_0978 +
           9908001-9908175,9908538-9908619,9910793-9910904,
           9911965-9913737
          Length = 713

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 42  PESEGHGGGLPDYSFDEFGFCIEEEDGPEQSSNKLLANAFV 164
           PE++ HG           G   E+ DGP ++S  LL  +F+
Sbjct: 644 PEAQAHGTASSPVQKASAGKANEKNDGPHKNSRTLLKKSFM 684


>07_01_1011 + 8571297-8571517,8571943-8572148,8572219-8572334
          Length = 180

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +3

Query: 33  LAQPESEGHGGGLPDYSFDEFGFCIEEEDGPEQSSNKLLANAFVEDDQHRLQWEFYSKEI 212
           + QP   G GGG     F  FG  +  +DG E+ +  L+A  + E   HR + +   K++
Sbjct: 77  VTQPVGRG-GGGNGQRWFHNFGTTVAGDDGVEEEAT-LVAMLYKELWWHRERSKPVVKDV 134

Query: 213 NFTEGS 230
           N  +GS
Sbjct: 135 NM-QGS 139


>06_03_1102 + 27614560-27614685,27615154-27615639
          Length = 203

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 42  PESEGHGGGLPDYSFDEFG 98
           PE  GHG GLP  + DE G
Sbjct: 78  PEVAGHGSGLPTEAGDESG 96


>05_01_0340 - 2677082-2678266
          Length = 394

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 45  ESEGHGGGLPDYSFDEFGFCIE 110
           E +G GGG P Y     GFC+E
Sbjct: 270 EEDGGGGGGPLYLLTMRGFCVE 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,576,917
Number of Sequences: 37544
Number of extensions: 174940
Number of successful extensions: 425
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)