Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328F12f
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    28   0.90 
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    26   2.7  
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    26   2.7  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    26   3.6  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   4.8  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   4.8  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.4  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    25   8.4  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   8.4  

>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 191 GGKIKGISGLKTPKRIGRKYERKDKKVER 277
           G K+K   GLK  +++ +K  +  KK+ER
Sbjct: 411 GAKVKEEKGLKKDRKLPKKMRKAQKKLER 439


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 159 KVFNSPISLR-MEAKLKEYRALRRRKELVENTKEKIRKSKDKIVNF 293
           K F++P +   M+    +YR + R +EL+    EKIR S     NF
Sbjct: 320 KRFSNPHTKHIMDLVRTQYRNVLRTRELIPEFLEKIRSSYSNNQNF 365


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 204 KEYRALRRRKELVE-NTKEKIRKSKDKIVN 290
           + +  +R+  E +E N  +K+RKS DK++N
Sbjct: 93  RTFLQIRKYLETIEENEFDKVRKSSDKLIN 122


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 132 ISSR*EIKRKVFNSPISLRMEAKLKEYRALRRRKELVENTKEKI-RKSKDKI 284
           +S R + K+K   +P+S    ++  E  + ++ KE   + K+KI  K KD++
Sbjct: 222 VSDRKKSKKKPKKTPVSNSTASQASENASDKKTKEKKSSGKQKIASKKKDQL 273


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +3

Query: 138 SR*EIKRKVFNSPISLRMEAKLKEYRALRRRKELVENTKEKIRKSKDKI 284
           SR +I+++   +   L  + + KE +   RRKE ++  +E+ ++  DK+
Sbjct: 507 SREQIQKQRQKAKTKLENQRRDKERQEELRRKEAMQKIEEQSKRDYDKL 555


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 192 EAKLKEYRALRRRKELVENTKEKIRKSKDKIVNFLIPQVFLDMTKDR 332
           E   +E R  +R  ++   T  KIRK++ +    LIP+   D+  +R
Sbjct: 438 ELMFREERKAKRVAKIKSKTYRKIRKNRKEKEMALIPKSEEDLENER 484


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -2

Query: 269 LSYLFFRIFYQFFSAS*GPIFL*---FCLHS*RNWAIEHFSFNFLSTTNVLAGISFNLSH 99
           L + FF +F+  FS S   +F     F ++   ++ I HF F F     V     F+LSH
Sbjct: 117 LLFFFFLLFFLSFSFSFSFLFFLSQIFIVYF-SSFPILHFLFFFFLCVCVFLSFLFSLSH 175

Query: 98  NL 93
            L
Sbjct: 176 LL 177


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 174 PISLRMEAKLKEYRALRRRKELV 242
           P+   ++A  +EYR  +R++ELV
Sbjct: 481 PLKKELDAYAEEYRERKRKRELV 503


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 109 LKLMPASTLVVDKKLKEKCSIAQ 177
           +KL+  S++++  KLKEKC + +
Sbjct: 622 MKLLNGSSILILGKLKEKCFLCE 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,588,881
Number of Sequences: 5004
Number of extensions: 26687
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)