Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328F12f
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503...    29   1.6  
07_03_0172 + 14697741-14697869,14697878-14697998,14698134-146982...    28   3.6  
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541...    27   6.3  

>12_01_0611 -
           5034481-5034709,5034863-5035020,5035231-5035475,
           5036686-5036983,5037644-5038482,5039763-5039823
          Length = 609

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 183 LRMEAKLKEYRALRRRKELVENTKEKIRKSKDKIVNFLIPQV 308
           ++ E  L+E RA  R+ ++   + E  R+ K+KI NF+  QV
Sbjct: 505 IKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQV 546


>07_03_0172 +
           14697741-14697869,14697878-14697998,14698134-14698226,
           14700888-14700946,14701003-14701599,14702813-14703020,
           14703102-14703178,14703263-14703302,14703413-14703473,
           14704120-14704189,14705014-14705235
          Length = 558

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 189 MEAKLKEYRALRRRKELVENTKEKIRKSKDKIVNFLIPQVFLDMTK 326
           +++ L++YR  R R EL E + EK   SK+ I +  +     D+T+
Sbjct: 423 VKSHLQKYRTARYRPELSEGSSEKKAASKEDIPSIDLKGGNFDLTE 468


>08_01_0619 +
           5412058-5413224,5413357-5413476,5413755-5413831,
           5414201-5414321
          Length = 494

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 326 FGHV*KNLWYQKVDNFIFRL 267
           FG+V    WY+K+D F+F+L
Sbjct: 435 FGNVFLVAWYRKLDGFLFKL 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,085,630
Number of Sequences: 37544
Number of extensions: 138601
Number of successful extensions: 353
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)