Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328F12f
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p...    28   4.3  
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF003130-13|AAK73876.1|  220|Caenorhabditis elegans Hypothetical...    27   5.7  

>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 215 GLKTPKRIGRKYERKDKKVER 277
           G K PK+ G+  ERK+K  ER
Sbjct: 810 GRKKPKKAGKSAERKEKSAER 830


>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 215 GLKTPKRIGRKYERKDKKVER 277
           G K PK+ G+  ERK+K  ER
Sbjct: 810 GRKKPKKAGKSAERKEKSAER 830


>AF003130-13|AAK73876.1|  220|Caenorhabditis elegans Hypothetical
           protein F55A12.10 protein.
          Length = 220

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +2

Query: 218 LKTPKRIGRKYERK--DKKVER*NCQLSDTTSFFRHDQR 328
           ++  K + RK + K  +KK E  +CQLS  TSF  ++++
Sbjct: 95  MENKKSVMRKEQTKKVEKKTEEMHCQLSKLTSFEENNRK 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,516,413
Number of Sequences: 27780
Number of extensions: 143882
Number of successful extensions: 469
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)