Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328F07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024750-5|AAF60441.2|  345|Caenorhabditis elegans Seven tm rece...    28   3.5  
AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm rec...    28   4.7  
AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm rec...    28   4.7  
AC024882-9|AAF60930.2|  341|Caenorhabditis elegans Hypothetical ...    28   4.7  
AC024882-8|AAF60931.2|  340|Caenorhabditis elegans Seven tm rece...    28   4.7  

>AC024750-5|AAF60441.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 172 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 412 MSTYTAITHMFCCFSLLFSNL 350
           M  Y  +   FCCFS+LFS L
Sbjct: 40  MGNYRHLMIYFCCFSILFSTL 60


>AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform b protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 412 MSTYTAITHMFCCFSLLFSNL 350
           M TY  +   FCCFS+L+S L
Sbjct: 37  MGTYKYLLIYFCCFSILYSIL 57


>AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform a protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 412 MSTYTAITHMFCCFSLLFSNL 350
           M TY  +   FCCFS+L+S L
Sbjct: 37  MGTYKYLLIYFCCFSILYSIL 57


>AC024882-9|AAF60930.2|  341|Caenorhabditis elegans Hypothetical
           protein Y9C9A.5 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 412 MSTYTAITHMFCCFSLLFSNLMKV*LLFYHSSMPPRFRRLLILVCK 275
           M +Y  +   FCCFS+L+S L  +   + HS     F  + + + K
Sbjct: 37  MGSYKYLLIYFCCFSMLYSILYIIVEPYIHSHGSSYFMMMKLGILK 82


>AC024882-8|AAF60931.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 168 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 412 MSTYTAITHMFCCFSLLFSNL 350
           M TY  +   FCCFS+L+S L
Sbjct: 37  MGTYKYLLVYFCCFSMLYSIL 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,322,429
Number of Sequences: 27780
Number of extensions: 191764
Number of successful extensions: 350
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)