Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328F06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   2.2  
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi...    26   3.9  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = -2

Query: 361 GLIKEILS-FELRRIEGSVEF---RGRYYISHQLNLSTYLLRIKIYKHDYNKPLHL 206
           G+IK + S   L + +G++ F   R    +S +++ + YL ++ + + DY + LHL
Sbjct: 566 GVIKTLESTLYLVKAKGNMVFALNRAAEPVSFEIDPTEYLFKLALLRKDYEQVLHL 621


>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
           L34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -2

Query: 478 SLKSSFTVVTIWHYIYPI*LTTVYVNYIGCRNLRPKTVNGLIKEILSFELRRIEGSVEFR 299
           +L SS   + I+  +  +   T Y N     N + K  +G +  I S   RR+      +
Sbjct: 43  TLYSSLPTMNIFGQMQQVRWKT-YGNEYQPSNRKRKRKHGFLSRIRSVNGRRVLRDRRQK 101

Query: 298 GRYYISH 278
           GR Y+SH
Sbjct: 102 GRMYLSH 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,463
Number of Sequences: 5004
Number of extensions: 27835
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)