Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328F06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical
           protein F17C11.10 protein.
          Length = 1101

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 436 IYPI*LTTVYVNYIGCRNLRPKTVNGL 356
           I+PI LT     YI CR  R   VNG+
Sbjct: 727 IFPIGLTVKEFRYIYCRGSRSPLVNGI 753


>Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical
           protein F43A11.4 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 181 YNYIVI*CLNVTVCCSRVCKFLYVISMYLGL-IDVKYNIGHGIRLT 315
           Y +IV+ C+N      + C FL  I+ +  + I + Y+   G+++T
Sbjct: 84  YQFIVLTCVNSLYAGLQYCGFLIAINRFCAMYIPMFYSTLFGVKIT 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,126,194
Number of Sequences: 27780
Number of extensions: 148545
Number of successful extensions: 314
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)