Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328F05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    27   2.2  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   3.9  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    25   6.8  

>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 419 ASESDQTKSSECGXKLXXNHS-ENIGPLKTSATELLAVLNSSGAPXLR*LMMGR 261
           A++ DQT   ECG K     + E++G +KTS  E  A+    G P +     GR
Sbjct: 252 AAKLDQTAEFECGAKWAVARAPESLG-IKTSGEESGAINADHGPPMVFPAPFGR 304


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 209 WVQRMALSCSRLHGNTSCLFVLSL 138
           W+  +AL+ SR +GNT  L  L L
Sbjct: 189 WMDSVALNLSRYYGNTEALSSLPL 212


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 202 WTHAAGSGGD*THLAHCSTYLPIISYLXFGAPLLLSTANNS 324
           W +  G+  D T+  +CST  P  SY      +L ++ NN+
Sbjct: 116 WNYCQGNSSDYTNPTYCST--PSPSYYFNPLTMLETSINNA 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,705
Number of Sequences: 5004
Number of extensions: 33323
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)