Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328F05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084 29 2.3
07_01_0975 + 8223269-8224354 28 4.0
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 28 4.0
07_01_0446 - 3371829-3372132,3374691-3375673 28 5.2
07_01_0445 - 3365244-3366227 28 5.2
06_03_0487 - 21352955-21353080,21353164-21353357,21353815-213539... 28 5.2
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257... 28 5.2
03_02_0601 - 9754281-9754340,9754978-9755061,9755384-9755585,975... 28 5.2
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 27 6.9
07_01_1212 + 11560247-11560684,11560773-11560826,11560926-115609... 27 9.1
03_06_0249 + 32638112-32639140 27 9.1
>11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084
Length = 197
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 291 SEXKVTDDG*VCGTVREVRLVTAAT-GSMGPANGALLLSPSRKHFLFICVEPGSTPR 124
SE +VT DG +V ++ + A G+ G G L PSR + + P PR
Sbjct: 35 SEVRVTFDGLQLKSVTDLEVAAAGDLGAEGEGGGGCSLGPSRSRWSPTTLRPDLAPR 91
>07_01_0975 + 8223269-8224354
Length = 361
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -3
Query: 228 TAATGSMGPANGALLLSPSRKHFLFICVEPGSTPR-CPSGTPSMSPQKGSPASQP 67
T GS G + + SPS P +P P+G+P+ P G PAS P
Sbjct: 235 TGYGGSSGSPSSSPSSSPSSSPSGSPSSSPSGSPSGSPAGSPAGGPTAGGPASGP 289
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 240 VRLVTAATGSMGPANGALLLSPSRKHFL 157
VR V A + S+GP + + L P KHFL
Sbjct: 845 VRFVVACSESIGPVDTFVYLFPHLKHFL 872
>07_01_0446 - 3371829-3372132,3374691-3375673
Length = 428
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 48 NFYSMCMAVKLEIPSVVTLMEFRLDSAEYCQAQHK 152
NF++ C+ + E+P+VV ++RL A H+
Sbjct: 101 NFHAGCLRLAAELPAVVLSFDYRLAPEHRLPAAHE 135
>07_01_0445 - 3365244-3366227
Length = 327
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 24 GCSRLPPFNFYSMCMAVKLEIPSVVTLMEFRL 119
G R P NF++ C+ + E+P+VV ++RL
Sbjct: 90 GSGRWP--NFHAWCLRLAAELPAVVLSFDYRL 119
>06_03_0487 -
21352955-21353080,21353164-21353357,21353815-21353973,
21354117-21354242,21354502-21354704,21354892-21355019,
21355323-21355565,21356734-21356928
Length = 457
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -3
Query: 252 TVREVRLVTAATGSMGPANGA-LLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 76
T +V + A+ GS G G L +CVEP +P G+P +G+ A
Sbjct: 306 TAGKVDVFVASVGSGGTLTGVGRYLKMKNPSINIVCVEPSESPVISGGSPGPHKIQGTGA 365
>06_01_0358 +
2573241-2573324,2573509-2573636,2573769-2573971,
2574129-2574254,2574522-2574680,2574857-2575050,
2575251-2575376
Length = 339
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = -3
Query: 252 TVREVRLVTAATGSMGPANGA-LLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKG-SP 79
T +V + A +G+ G +G L ICVEP +P G PS +G P
Sbjct: 188 TAGKVDIFVAGSGTGGTISGVGKYLKMKNPAVKVICVEPAESPVISGGKPSRHKIQGMGP 247
Query: 78 ASQPYTLN 55
P L+
Sbjct: 248 GFVPKNLD 255
>03_02_0601 -
9754281-9754340,9754978-9755061,9755384-9755585,
9755663-9755730,9755999-9756094,9756307-9756508,
9756590-9756661,9756786-9756826,9757016-9757089,
9757991-9758026,9758486-9758720
Length = 389
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 98 DIDGVPLGQRGVLPGSTQINRKCFREGESRRAPF 199
DIDGV L R + GS Q R+ + E + + PF
Sbjct: 52 DIDGVILRGRSPIGGSPQAIRRLYSEDGTLKIPF 85
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 138 GSTPRCPSGTPSMSPQKGSPASQP 67
GS+PRC S M Q+ SP S P
Sbjct: 307 GSSPRCASPEKIMGSQERSPRSSP 330
>07_01_1212 +
11560247-11560684,11560773-11560826,11560926-11560985,
11561084-11561227
Length = 231
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 141 PGSTPRCPSGTPSMSPQKGSPASQP 67
P STP GTPS +P G+P+S P
Sbjct: 23 PSSTPAF--GTPSTNPAFGTPSSTP 45
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 141 PGSTPRCPSGTPSMSPQKGSPASQP 67
P STP GTPS +P G+P+S P
Sbjct: 50 PSSTPSF--GTPSTAPAFGTPSSTP 72
>03_06_0249 + 32638112-32639140
Length = 342
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 48 NFYSMCMAVKLEIPSVVTLMEFRLDSAEYCQAQH 149
NF++ C+ + E+P+VV ++RL A H
Sbjct: 97 NFHACCLRLAHELPAVVLSADYRLAPEHRLPAAH 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,170,692
Number of Sequences: 37544
Number of extensions: 255948
Number of successful extensions: 850
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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