Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328F02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   3.9  
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S...    25   5.2  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    25   9.0  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 223 HRSKQ*KKNSKRCYKVGTLSIYRKPEKMLNNYNDHYLD 110
           HRS+  ++ +KR ++    S+ ++P    N  + HY D
Sbjct: 505 HRSEAHRRRTKRAFRRLAASLKKRPSDKDNKLHIHYDD 542


>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
           Alg14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 161 YAQRSNLITPFAIFFSLLRSV 223
           Y ++S L TPF  F+SLL S+
Sbjct: 102 YVKQSWLTTPFTAFWSLLGSI 122


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 109 NLSNDHYNYLTSFRAFCICSTFQPYNTFCYF 201
           +L   H  +L    A+C C TF+    F +F
Sbjct: 56  HLGKRHREFLPRVTAYCTCDTFRVDLLFKFF 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,646
Number of Sequences: 5004
Number of extensions: 33466
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)