Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328F02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    29   2.7  

>Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical
           protein T07D10.1 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 231 CQPTWC*MVTGAHRHLQSKCATHLEI*ILRSQYSYNSCPTLQTETHYCF 377
           C PTWC  VTGA  H + +C              Y  CPT+ +E HY +
Sbjct: 111 CIPTWC-SVTGARFH-EFQCTPPAP---------YCPCPTILSEFHYTY 148


>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 148 EKMLNNYNDHYLDFTRFYFVLIITE*SLFKINTK 47
           +KM+       L F  F+FVL +T  SL K NTK
Sbjct: 434 KKMMKTVGMFILIFCTFWFVLAVTHVSLSKKNTK 467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,299,656
Number of Sequences: 27780
Number of extensions: 191061
Number of successful extensions: 341
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)