Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328F02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   1.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   5.8  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 48  NFTITYSNKHNYN 10
           N+   Y+NK+NYN
Sbjct: 95  NYKYNYNNKYNYN 107


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 249 NTRWAGSSSTDLSNEKKIAK 190
           ++ W  S  TD SNEKKI K
Sbjct: 197 SSEW-DSDYTDKSNEKKIPK 215


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 127 YNYLTSFRAFCICSTFQPYNTF 192
           Y+ L+SF   CI   F  YN F
Sbjct: 346 YSSLSSFYIPCIIMVFLYYNIF 367


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 348 WGSCCNYTET 319
           WGSC NY  T
Sbjct: 98  WGSCNNYWNT 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,908
Number of Sequences: 438
Number of extensions: 2422
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)