Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328F01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 149 2e-37
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 129 2e-31
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 129 2e-31
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 96 3e-21
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 80 2e-16
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 64 2e-11
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 64 2e-11
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 62 4e-11
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 48 6e-07
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 48 1e-06
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 48 1e-06
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 47 1e-06
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 43 2e-05
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 36 0.005
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.008
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 31 0.10
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 29 0.32
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 27 1.7
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 6.8
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 9.0
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 149 bits (361), Expect = 2e-37
Identities = 74/125 (59%), Positives = 96/125 (76%), Gaps = 8/125 (6%)
Frame = +1
Query: 109 MRLVDSKKLLELQNNPSNIRNICIVAHVDHGKTTLADSLISSNGIISQRMSGKLRYMDSR 288
M ++ +KL+ LQ N NIRN ++AHVDHGKTTLADSL++SNGIIS +++G +R++D R
Sbjct: 1 MPVIPPEKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFR 60
Query: 289 PDEQQRGITMKSSSISLYH---AMNQE-----EYLVNLIDSPGHIDFSSEVSTAVMLCDG 444
DE RGITMKSS+ISL+ + N E +YL+NLIDSPGH+DFSSEVS+A LCDG
Sbjct: 61 EDEITRGITMKSSAISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDG 120
Query: 445 AIVVV 459
A V+V
Sbjct: 121 AFVLV 125
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 129 bits (312), Expect = 2e-31
Identities = 62/123 (50%), Positives = 88/123 (71%), Gaps = 12/123 (9%)
Frame = +1
Query: 127 KKLLELQNNPSNIRNICIVAHVDHGKTTLADSLISSNGIISQRMSGKLRYMDSRPDEQQR 306
+++ L PSN+RN+ ++AHVDHGK+TL DSL+ GIIS +G R+MD+R DEQ+R
Sbjct: 7 EEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQER 66
Query: 307 GITMKSSSISLYHAMNQE------------EYLVNLIDSPGHIDFSSEVSTAVMLCDGAI 450
G+T+KS++ISL+ M + ++LVNLIDSPGH+DFSSEV+ A+ + DGA+
Sbjct: 67 GVTIKSTAISLFAEMTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGAL 126
Query: 451 VVV 459
VVV
Sbjct: 127 VVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 129 bits (312), Expect = 2e-31
Identities = 62/123 (50%), Positives = 88/123 (71%), Gaps = 12/123 (9%)
Frame = +1
Query: 127 KKLLELQNNPSNIRNICIVAHVDHGKTTLADSLISSNGIISQRMSGKLRYMDSRPDEQQR 306
+++ L PSN+RN+ ++AHVDHGK+TL DSL+ GIIS +G R+MD+R DEQ+R
Sbjct: 7 EEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQER 66
Query: 307 GITMKSSSISLYHAMNQE------------EYLVNLIDSPGHIDFSSEVSTAVMLCDGAI 450
G+T+KS++ISL+ M + ++LVNLIDSPGH+DFSSEV+ A+ + DGA+
Sbjct: 67 GVTIKSTAISLFAEMTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGAL 126
Query: 451 VVV 459
VVV
Sbjct: 127 VVV 129
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 95.9 bits (228), Expect = 3e-21
Identities = 44/123 (35%), Positives = 84/123 (68%), Gaps = 3/123 (2%)
Frame = +1
Query: 100 SIKMRLVDSKKLLE--LQNNPSN-IRNICIVAHVDHGKTTLADSLISSNGIISQRMSGKL 270
S K+ D+K ++ ++ P N +RN ++AH+DHGK+TL+D ++ G+I++ + +
Sbjct: 34 SRKLASEDNKPSIQEVVRGIPQNRVRNWAVIAHIDHGKSTLSDCILKLTGVINEH-NFRN 92
Query: 271 RYMDSRPDEQQRGITMKSSSISLYHAMNQEEYLVNLIDSPGHIDFSSEVSTAVMLCDGAI 450
+++D E++RGIT+K+ + S+ + + + YL+NLID+PGH+DF +EV ++ C+G I
Sbjct: 93 QFLDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCI 152
Query: 451 VVV 459
++V
Sbjct: 153 LLV 155
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 80.2 bits (189), Expect = 2e-16
Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 2/103 (1%)
Frame = +1
Query: 157 SNIRNICIVAHVDHGKTTLADSLISSNGIISQ--RMSGKLRYMDSRPDEQQRGITMKSSS 330
++IRN+ I+AH+D GKTTL + ++ G S + MD P E+QRGIT+ S++
Sbjct: 26 NSIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDTVMDYLPAERQRGITINSAA 85
Query: 331 ISLYHAMNQEEYLVNLIDSPGHIDFSSEVSTAVMLCDGAIVVV 459
IS + NQ +NLID+PGH DF+ EV +V + DGA+ ++
Sbjct: 86 IS-FTWRNQR---INLIDTPGHADFTFEVERSVAVLDGAVAII 124
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 63.7 bits (148), Expect = 2e-11
Identities = 37/127 (29%), Positives = 67/127 (52%), Gaps = 4/127 (3%)
Frame = +1
Query: 133 LLELQNNPSNIRNICIVAHVDHGKTTLADSLIS-SNGIISQRMSGKLRYMDSRPDEQQRG 309
L L ++R+ + H+ HGK+ L D L+ ++ LRY D+ E++R
Sbjct: 130 LFGLLTGTDDVRSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERV 189
Query: 310 ITMKSSSISLYHA-MNQEEYLVNLIDSPGHIDFSSEVSTAVMLCDGAIVVVCMNSST--N 480
+++KS+ ++L + M + + ID+PGH+DF EV+ + + DG ++VV + N
Sbjct: 190 MSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMIN 249
Query: 481 DIHIIRH 501
II+H
Sbjct: 250 TTRIIKH 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 63.7 bits (148), Expect = 2e-11
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 19/119 (15%)
Frame = +1
Query: 163 IRNICIVAHVDHGKTTLADSLISSNGIISQ--RMSGKLRY---MDSRPDEQQRGITMKSS 327
IRNI I AH+D GKTT + ++ G I + GK MD E+++GIT++S+
Sbjct: 59 IRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQSA 118
Query: 328 S--------ISLYHAMNQEE------YLVNLIDSPGHIDFSSEVSTAVMLCDGAIVVVC 462
+ + A +++ Y +N+ID+PGHIDF+ EV A+ + DGA++V+C
Sbjct: 119 ATHCTWERTVDQIEANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVLC 177
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 62.5 bits (145), Expect = 4e-11
Identities = 34/97 (35%), Positives = 49/97 (50%)
Frame = +1
Query: 169 NICIVAHVDHGKTTLADSLISSNGIISQRMSGKLRYMDSRPDEQQRGITMKSSSISLYHA 348
NI + HVDHGKTTL ++ + Q +D P+E+ RGIT+ S+ + Y
Sbjct: 55 NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITISSAHVE-YET 113
Query: 349 MNQEEYLVNLIDSPGHIDFSSEVSTAVMLCDGAIVVV 459
N+ +D PGH D+ + T DGAI+VV
Sbjct: 114 ANRH---YAHVDCPGHADYIKNMITGAATMDGAIIVV 147
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 48.4 bits (110), Expect = 6e-07
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Frame = +1
Query: 115 LVDSKKLLELQNNPSNIRNICIVAHVDHGKTTLADSLISSNGIISQRMSGKLR------- 273
LV ++ E Q+NP + ++ + HVD GK+T+ ++ G I+ R KL
Sbjct: 162 LVSVPEIFE-QSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSG 220
Query: 274 --------YMDSRPDEQQRGITMKSSSISLYHAMNQEEYLVNLIDSPGHIDFSSEVSTAV 429
+D+ +E+ RG+TM +S + ++ + + D+PGH DF S +
Sbjct: 221 KGSFSYAWLLDTTEEERARGVTMDVASTT----FESDKKIYEIGDAPGHRDFISGMIAGA 276
Query: 430 MLCDGAIVVVCMNSSTND 483
D A++VV +SS N+
Sbjct: 277 SSADFAVLVV--DSSQNN 292
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 47.6 bits (108), Expect = 1e-06
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Frame = +1
Query: 169 NICIVAHVDHGKTTLADSLISSNGIISQRM------------SGKLRY---MDSRPDEQQ 303
N+ ++ HVD GK+T LI G I +R G +Y +D E++
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Query: 304 RGITMKSSSISLYHAMNQEEYLVNLIDSPGHIDFSSEVSTAVMLCDGAIVVV 459
RGIT+ I+L+ +Y V +ID+PGH DF + T D AI+++
Sbjct: 69 RGITI---DIALW-KFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILII 116
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 47.6 bits (108), Expect = 1e-06
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Frame = +1
Query: 169 NICIVAHVDHGKTTLADSLISSNGIISQRM------------SGKLRY---MDSRPDEQQ 303
N+ ++ HVD GK+T LI G I +R G +Y +D E++
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Query: 304 RGITMKSSSISLYHAMNQEEYLVNLIDSPGHIDFSSEVSTAVMLCDGAIVVV 459
RGIT+ I+L+ +Y V +ID+PGH DF + T D AI+++
Sbjct: 69 RGITI---DIALW-KFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILII 116
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 47.2 bits (107), Expect = 1e-06
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Frame = +1
Query: 169 NICIVAHVDHGKTTLADSLISSNGIISQRM------------SGKLRY---MDSRPDEQQ 303
N+ ++ HVD GK+T LI G I +R G +Y +D E++
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Query: 304 RGITMKSSSISLYHAMNQEEYLVNLIDSPGHIDFSSEVSTAVMLCDGAIVVV 459
RGIT+ I+L+ +Y V +ID+PGH DF + T D A++++
Sbjct: 69 RGITI---DIALW-KFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLII 116
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 43.2 bits (97), Expect = 2e-05
Identities = 28/95 (29%), Positives = 46/95 (48%)
Frame = +1
Query: 175 CIVAHVDHGKTTLADSLISSNGIISQRMSGKLRYMDSRPDEQQRGITMKSSSISLYHAMN 354
CI+ HVD GKT L D+L SN + + +G + I K+ ++ +
Sbjct: 488 CILGHVDTGKTKLLDNLRRSN--VQEGEAGGITQQIGATYFPIESIKQKTKVVNKKGKLQ 545
Query: 355 QEEYLVNLIDSPGHIDFSSEVSTAVMLCDGAIVVV 459
+ +ID+PGH F++ S LC+ AI+V+
Sbjct: 546 YNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 35.5 bits (78), Expect = 0.005
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Frame = +1
Query: 169 NICIVAHVDHGKTTLADSLISSNGIISQRMSGKLR---------------YMDSRPDEQQ 303
NI + HVD GK+TL +++ G++ +R K+ +DS +E++
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 299
Query: 304 RGITMKSSSISLYHAMNQEEYLVNLIDSPGHIDFSSEVSTAVMLCDGAIVVV 459
+G T++ Y + +L+D+PGH + + + D ++V+
Sbjct: 300 KGKTVEVG--RAYFETEHRRF--SLLDAPGHKGYVTNMINGASQADIGVLVI 347
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 34.7 bits (76), Expect = 0.008
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Frame = +1
Query: 172 ICIVAHVDHGKTTLADSLISSNGIISQRMSGKLRYMDSRPDEQQRGITMKSSSISLYHAM 351
+ ++ HVDHGKTTL D+ S I+ G GIT K + ++
Sbjct: 174 VTLMGHVDHGKTTLLDAFRKST--IASTEHG--------------GITQKIGAFTV--PF 215
Query: 352 NQEEYLVNLIDSPGHIDFSSEVSTAVMLCDGAIVVVCMNSST--NDIHIIRHI 504
++ + +D+PGH+ F + + D ++VV + + I+HI
Sbjct: 216 DKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDGVKPQTVEAIKHI 268
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 31.1 bits (67), Expect = 0.10
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -3
Query: 288 PAVHISKFSGHSLGYDSITGYQGICQCGFAMV-HVSHNANITNI 160
P H + GH T Y GIC CG +V N I N+
Sbjct: 125 PCFHATNHEGHETHVSISTSYSGICDCGDPEAWNVDLNCKIHNV 168
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 29.5 bits (63), Expect = 0.32
Identities = 24/78 (30%), Positives = 41/78 (52%)
Frame = +1
Query: 169 NICIVAHVDHGKTTLADSLISSNGIISQRMSGKLRYMDSRPDEQQRGITMKSSSISLYHA 348
N+ +V GK+TL ++L S++ + S+ G+L Y P Q I + S +
Sbjct: 34 NVMVVGPSGSGKSTLINTLFSAHLMDSK---GRLDYQ--APYRQTTEIHVTSQVVR---- 84
Query: 349 MNQEEYLVNLIDSPGHID 402
N+ + +NLID+PG+ D
Sbjct: 85 ENRVQLQLNLIDTPGYGD 102
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/55 (18%), Positives = 29/55 (52%)
Frame = +1
Query: 25 IYILHVAVIY*KYSIIRVKFICRIKSIKMRLVDSKKLLELQNNPSNIRNICIVAH 189
+Y+LH+A + + + ++ + +I++++ L+ + L + RN + +H
Sbjct: 3 VYLLHLASTHAHFHLPELETLAKIENVEFWLIPKSEYLNVAFKSDKSRNQALFSH 57
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +2
Query: 431 CFAMEPLLLYV*TVLLMIFISYVIYFLKIM 520
C+ ++P+L ++ ++ IFI + I FL ++
Sbjct: 1315 CYMLKPVLDWIRRCIISIFIVFFISFLPLV 1344
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 304 RGITMKSSSISLYHAMNQEEYLVNLID 384
RG S+++S Y+ + + EYLVN++D
Sbjct: 1493 RGKERTSNTMSTYN-LEEVEYLVNMVD 1518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,840
Number of Sequences: 5004
Number of extensions: 47483
Number of successful extensions: 163
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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