Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328F01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    50   2e-08
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    49   3e-08
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    39   4e-05
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    33   0.002
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    32   0.004
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.20 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.62 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   3.3  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   7.7  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 49.6 bits (113), Expect = 2e-08
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
 Frame = +1

Query: 169 NICIVAHVDHGKTTLADSLISSNGIISQRM------------SGKLRY---MDSRPDEQQ 303
           NI ++ HVD GK+T    LI   G I +R              G  +Y   +D    E++
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68

Query: 304 RGITMKSSSISLYHAMNQEEYLVNLIDSPGHIDFSSEVSTAVMLCDGAIVVV 459
           RGIT+    I+L+      +Y V +ID+PGH DF   + T     D A+++V
Sbjct: 69  RGITI---DIALWK-FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 116


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 49.2 bits (112), Expect = 3e-08
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
 Frame = +1

Query: 169 NICIVAHVDHGKTTLADSLISSNGIISQRM------------SGKLRY---MDSRPDEQQ 303
           NI ++ HVD GK+T    LI   G I +R              G  +Y   +D    E++
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68

Query: 304 RGITMKSSSISLYHAMNQEEYLVNLIDSPGHIDFSSEVSTAVMLCDGAIVVV 459
           RGIT+    I+L+      +Y V +ID+PGH DF   + T     D A+++V
Sbjct: 69  RGITI---DIALWK-FETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 116


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +1

Query: 277 MDSRPDEQQRGITMKSSSISLYHAMNQEEYLVNLIDSPGHIDFSSEVSTAVMLCDGAIVV 456
           +D    E++RGIT+    I+L+      +Y V +ID+PGH DF   + T     D A+++
Sbjct: 3   LDKLKAERERGITI---DIALWK-FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 58

Query: 457 V 459
           V
Sbjct: 59  V 59


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 32.7 bits (71), Expect = 0.002
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 361 EYLVNLIDSPGHIDFSSEVSTAVMLCDGAIVVV 459
           +Y V +ID+PGH DF   + T     D A+++V
Sbjct: 11  KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 43


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 31.9 bits (69), Expect = 0.004
 Identities = 29/104 (27%), Positives = 43/104 (41%)
 Frame = +1

Query: 172 ICIVAHVDHGKTTLADSLISSNGIISQRMSGKLRYMDSRPDEQQRGITMKSSSISLYHAM 351
           + I+ HVDHGKTTL D+L   N  I++   G              GIT     I  +   
Sbjct: 148 VTIMGHVDHGKTTLLDAL--RNTSIAKSEFG--------------GIT---QCIGAFDVT 188

Query: 352 NQEEYLVNLIDSPGHIDFSSEVSTAVMLCDGAIVVVCMNSSTND 483
            +    V  +D+PGH  F S       + D  ++VV  +    +
Sbjct: 189 LESGERVTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE 232


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +1

Query: 169 NICIVAHVDHGKTTLADSLISSNGIISQRMSGKLR-----YMDSRPDEQQRG 309
           NI  + HV HGK+T+  ++   +G+ + R   +L       +D+R ++  RG
Sbjct: 44  NIGTIGHVAHGKSTIVKAI---SGVQTVRFKNELERNITIKLDTRAEDSTRG 92


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 417 FHCCNALRWSHC 452
           F CC A+R SHC
Sbjct: 68  FGCCGAIRESHC 79


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 465 HTYNNNGSIAKHYSSGNFT*KVNVPRRVY 379
           + YNNN    K Y + N+  ++ +P  VY
Sbjct: 97  YNYNNNNYNKKLYYNINYIEQIPIPVPVY 125


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 465 HTYNNNGSIAKHYSSGNFT*KVNVPRRVY 379
           + YNNN    K Y + N+  ++ +P  VY
Sbjct: 97  YNYNNNNYNKKLYYNINYIEQIPIPVPVY 125


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 465 HTYNNNGSIAKHYSSGNFT*KVNVPRRVY 379
           + YNNN    K Y + N+  ++ +P  VY
Sbjct: 97  YNYNNNNYNKKLYYNINYIEQIPIPVPVY 125


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 465 HTYNNNGSIAKHYSSGNFT*KVNVPRRVY 379
           + YNNN    K Y + N+  ++ +P  VY
Sbjct: 97  YNYNNNNYNKKLYYNINYIEQIPIPVPVY 125


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 133 LLELQNNPSNIRNI 174
           L+ELQ NP  + NI
Sbjct: 274 LMELQKNPQKLENI 287


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 113 RILIDFILQMNLTLIM 66
           +ILI FIL + +T++M
Sbjct: 5   QILILFILSLTITIVM 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,892
Number of Sequences: 438
Number of extensions: 3636
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)