Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328E12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    32   0.045
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces...    26   3.0  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   6.8  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    25   6.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.8  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    25   6.8  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   9.0  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   9.0  

>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 32.3 bits (70), Expect = 0.045
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 184 NVNQSHLSYLRNEVDLANYPELSYNALHCS-HARLLSSLSYLANTIHITASDRYMFPHVV 360
           N N+ ++   +N + L  + E+    L C  H      L  + N   + + +RY+F  + 
Sbjct: 46  NTNKHNVYSTKNSMYLLGFEEILNTVLDCEPHIFTDDELRVIENFKALDSDERYLFVRLF 105

Query: 361 VKKRNSYIK 387
           ++KRN + +
Sbjct: 106 MRKRNKWFR 114


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 131 VVQLSCTPIELRYEESI 81
           + +LSCTP++L+Y ES+
Sbjct: 181 IEKLSCTPLKLKYVESL 197


>SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 64  EKLLQQILSSYLNSMGVHDNWTTQNSLRLVDLLNPSQNLDNVNQSHLSYL 213
           E  +   L ++  S+ V D+  ++   R+  L    Q LDN N+S  S+L
Sbjct: 23  ENAIPSNLQAFTKSLAVLDDNVSEFRKRMNHLSATKQILDNFNESFSSFL 72


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 435 SRIFMFLVSAYHTNCIFNVTVSFLNNNMRKHI 340
           SRI  FL+  YH      V +  L NN+R  +
Sbjct: 837 SRIIFFLLRTYHRQLTTTVKMRPLLNNIRSSL 868


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
 Frame = +1

Query: 10  CPFSASPTNQKNIRRYCPEKLLQQILSSY-LNSMGVHDNWTTQNSLRLVDLLNPSQNLDN 186
           CPFSA      ++R  C ++L     S++ LN++G  D+  +++S        P+  L++
Sbjct: 271 CPFSAFEDISNSVRSSCGKRLSPS--SNFDLNNLGGDDDLRSESSSDFESA--PASILEH 326

Query: 187 VNQSHLSYLRNEVDLANYPELSYNALHCSHARLLSSLSYLA 309
              +   +++ E D+ +   L ++ +   + +L  S+ YLA
Sbjct: 327 EPTNWDDWVQ-EADVTDIDSLPWHNIRPGN-KLFYSVIYLA 365


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 253 YNALHCSHARLLSSLSYLANTIHITASDRYMFPHVVVK 366
           Y     +  + LS L+Y+  T   T S++ + P +V+K
Sbjct: 275 YRNFFMAQVKTLSFLAYILRTHPNTLSEKDIIPDIVIK 312


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 438 YSRIFMFLVSAYHTNCIFNVTVSFLNNNMRKHISIGRRYVDGIS 307
           YS+ F+  V A     + +  VS LN + R+H+++  R +D IS
Sbjct: 389 YSQGFVLAVPATSDKLLPSALVSALNEDGRRHVTLLPR-LDAIS 431


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 31  TNQKNIRRYCPEKLLQQILSSY 96
           +  K I++YCP   ++++++SY
Sbjct: 253 SKHKFIKKYCPNTSVKEVVASY 274


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +1

Query: 70  LLQQILSSYLNSMGVHDNWTTQNSLRLVDLLNPSQNLDNVNQSHLSYLRNEVDLANYPEL 249
           L+Q++   YL+  GV D         LV  LNP   LD      L  L  E   ++ PEL
Sbjct: 395 LIQKLRKKYLSRWGVLDAAFVTVITSLVSFLNPWLRLDMTLGMEL--LFQECKSSSSPEL 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,467
Number of Sequences: 5004
Number of extensions: 41392
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)