Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328E10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    28   0.97 
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    26   3.0  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   3.9  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   6.8  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    25   9.0  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.0  

>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 70  TLRTATVLTKVNYVCRLVSHCLVKFYLCKVKCSVCSSY 183
           ++ + +V  + N++  +  HC    +  + KCSVC  Y
Sbjct: 119 SVNSMSVSPQSNFMYAICDHCEQPIHNVRYKCSVCDDY 156


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 159 HFT*IEFY*TMRNQPTNIVH--LGQYCSSPQCVLMERLTDIF 40
           HF+ IE+   +R+  + +V+  +GQ CS  QC+   R +  F
Sbjct: 208 HFSHIEWNLHLRSNKSIVVNNFVGQLCSRTQCMTCGRTSTTF 249


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +1

Query: 4   VCFFKKNVLRAKKYICQSLH*NTLRTATVLTKVNYVCRLVSHC----LVKFYLCKVKCSV 171
           +C F  + L  +K +C+ L+ N +   ++++ + +    +S+     +  F++  VK S 
Sbjct: 481 ICLFIVHYLSCEKVLCEKLNRNCMNAQSLMSSLGFSVPPMSYAEFLIISSFHISAVKRSP 540

Query: 172 CSS 180
            SS
Sbjct: 541 FSS 543


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 317 LNYTYILYLLKLCN-LVRELGLKTPC 391
           +N+ Y+LY LKL   L  E+GL   C
Sbjct: 395 INWLYLLYELKLAGILADEMGLGKTC 420


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 447 QPRFYKTPKLESLDI 403
           QP+F+K PK+  LD+
Sbjct: 233 QPKFFKNPKILCLDV 247


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -2

Query: 229 NFI*KNILRIYGQHINMKNKQNISLYINRILLNNEKPAYKHSS 101
           NF  +N+ +    +++  +  N + ++ + +LNNE  +++HSS
Sbjct: 21  NFCFRNLSQSSNNNVSYASSSNRN-FVPQNVLNNEYQSFQHSS 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,766
Number of Sequences: 5004
Number of extensions: 43361
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)