Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328E10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    24   1.1  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    24   1.1  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    24   1.1  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    24   1.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   1.9  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   2.5  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   2.5  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   2.5  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   2.5  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   2.5  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   2.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.3  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   5.8  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   7.7  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   7.7  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   7.7  

>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 357 LHNFNKYKIYV*FNVNSIELLKV 289
           +HN N YK    +N+N IE + V
Sbjct: 312 IHNNNNYKKLQYYNINYIEQIPV 334


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 357 LHNFNKYKIYV*FNVNSIELLKV 289
           +HN N YK    +N+N IE + V
Sbjct: 323 IHNNNNYKKLQYYNINYIEQIPV 345


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 357 LHNFNKYKIYV*FNVNSIELLKV 289
           +HN N YK    +N+N IE + V
Sbjct: 323 IHNNNNYKKLQYYNINYIEQIPV 345


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 357 LHNFNKYKIYV*FNVNSIELLKV 289
           +HN N YK    +N+N IE + V
Sbjct: 312 IHNNNNYKKLQYYNINYIEQIPV 334


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 24 CSTCKKIYLSVSPLEHIEDCY 86
          C+ CK++Y S++ L + +  Y
Sbjct: 35 CNICKRVYSSLNSLRNHKSIY 55


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 372 SSRTRLHNFNKYKIYV*FNVNSIELLKV 289
           S++T  +N N YK    +N+N IE + V
Sbjct: 86  SNKTIHNNNNNYKKLQYYNINYIEQIPV 113


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 372 SSRTRLHNFNKYKIYV*FNVNSIELLKV 289
           S++T  +N N YK    +N+N IE + V
Sbjct: 86  SNKTIHNNNNNYKKLQYYNINYIEQIPV 113


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 372 SSRTRLHNFNKYKIYV*FNVNSIELLKV 289
           S++T  +N N YK    +N+N IE + V
Sbjct: 86  SNKTIHNNNNNYKKLQYYNINYIEQIPV 113


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 372 SSRTRLHNFNKYKIYV*FNVNSIELLKV 289
           S++T  +N N YK    +N+N IE + V
Sbjct: 86  SNKTIHNNNNNYKKLQYYNINYIEQIPV 113


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = -3

Query: 474 KLRLKHKTVQPRFYKTPKLESLDIHFFKHGVFNPSSRTRLHNFNKYKIYV*FNVNSIELL 295
           K R + +T + R  + PK+ S   + + +  +N +     +N+NK K+Y  +N+N IE +
Sbjct: 64  KERSRDRTERERS-REPKIISSLSNNYNYSNYN-NYNNNYNNYNK-KLY--YNINYIEQI 118

Query: 294 KV 289
            V
Sbjct: 119 PV 120


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 372 SSRTRLHNFNKYKIYV*FNVNSIELLKV 289
           S++T  +N N YK    +N+N IE + V
Sbjct: 319 SNKTIHNNNNNYKKLQYYNINYIEQIPV 346


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/41 (24%), Positives = 16/41 (39%)
 Frame = +1

Query: 79  TATVLTKVNYVCRLVSHCLVKFYLCKVKCSVCSSY*YAGHK 201
           +A+      ++CR  +HC    + C      C     AG K
Sbjct: 726 SASTARSEQFLCRYEAHCFALCHCCDFDACDCEMTCPAGCK 766


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
          protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +3

Query: 24 CSTCKKIYLSVSPLE-HI 74
          C  C+K+Y+S+  L+ HI
Sbjct: 19 CKYCEKVYVSLGALKMHI 36


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 393 KHGVFNPSSRTRL 355
           KHG+ N +S TRL
Sbjct: 75  KHGLTNTASHTRL 87


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 393 KHGVFNPSSRTRL 355
           KHG+ N +S TRL
Sbjct: 80  KHGLTNTASHTRL 92


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 393 KHGVFNPSSRTRL 355
           KHG+ N +S TRL
Sbjct: 80  KHGLTNTASHTRL 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,611
Number of Sequences: 438
Number of extensions: 2682
Number of successful extensions: 21
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)