Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328E09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    27   1.7  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    26   3.9  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   3.9  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   6.8  
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc...    25   6.8  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    25   9.0  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   9.0  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   9.0  

>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -1

Query: 278 KLRLRSPNSTGSSFDILNGRQSVSTA--TSRKESV 180
           K+R   PN TG+++D+LN   S++ A   S KE++
Sbjct: 320 KIRTSIPNLTGNAYDLLNRLLSLNPAKRISAKEAL 354


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 210 DTLPAVENIKRRTGRVRRSQPQF 278
           DT+P +E + +  GR R+  P F
Sbjct: 143 DTVPWIEKVSKILGRYRKDAPSF 165


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 123 SCPKCEMQVAVASKSCKCGHTF 188
           +CP C  +  VA++  +CGH +
Sbjct: 213 ACPFCLEEKPVAARMSRCGHVY 234


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 366 NSREKTENGKNEYYCNHLSS 425
           + RE   +GKN  YC+H S+
Sbjct: 219 HGREHRSSGKNFVYCDHCSN 238


>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
           Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 354 EDSKNSREKTENGKNEYYCNHLSSKIGIL*FPNFASLHVTYLQPDKFQCR 503
           E SK   E TEN  N+Y    L +K   L        ++ +  P+ F+ +
Sbjct: 108 EKSKRDNEGTENDANQYTLELLHAKESELKLLKTQLSNLNHCNPETFELK 157


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = -1

Query: 155 NGYLHFTFRATFSYHFVFPHIFI 87
           +GY+   +   + Y F +P++F+
Sbjct: 337 SGYIALIYALLYGYFFAYPNVFV 359


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 402 YYCNHLSSKIGIL*FPNFASLHVTYLQPDKFQ 497
           Y+CNHL S++  +  P+  +     L P  FQ
Sbjct: 118 YWCNHLYSQLAAIKTPSRPAFGEFDLLPPSFQ 149


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 190 FLLVAVLTLCRPLRISKEEPVEL 258
           F  V++LTL RPLR+S+++ + L
Sbjct: 209 FEAVSMLTLYRPLRLSQKQDLWL 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,602
Number of Sequences: 5004
Number of extensions: 31144
Number of successful extensions: 75
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)