Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328E09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025452-6|AAK71871.1|  323|Caenorhabditis elegans Serpentine re...    28   4.7  
U80032-1|AAB53879.2|  568|Caenorhabditis elegans Phosphodiestera...    27   6.2  

>AF025452-6|AAK71871.1|  323|Caenorhabditis elegans Serpentine
           receptor, class i protein30 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 199 VAVLTLCRPLRISKEEPVELGDRSLSFMMPSITKSR 306
           VA+ T C  +RISKEE  +L   + S ++P   + R
Sbjct: 145 VAISTACHLIRISKEEQWQLIQLNHSSLIPQFQRLR 180


>U80032-1|AAB53879.2|  568|Caenorhabditis elegans Phosphodiesterase
           protein 5 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 229 RISKEEPVELGDRSLSFMMPSITKSRL 309
           R+S +EP+ + DR  + M+P +  SRL
Sbjct: 522 RLSGKEPIPMMDRQQAHMLPQMQASRL 548


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,273,460
Number of Sequences: 27780
Number of extensions: 180584
Number of successful extensions: 442
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)