Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328E08f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC108907-1|AAI08908.2|  917|Homo sapiens TJP3 protein protein.         31   1.9  
BC108906-1|AAI08907.1|  938|Homo sapiens TJP3 protein protein.         31   1.9  
AC005954-1|AAC72274.1|  952|Homo sapiens ZO-3 [Homo sapiens] pro...    31   1.9  

>BC108907-1|AAI08908.2|  917|Homo sapiens TJP3 protein protein.
          Length = 917

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
 Frame = -3

Query: 396 RLPRPSNRNALLLHGRNRQGGGTYPRGLT-----RRPP---VQSKPVK 277
           R PRP  R     HGR   GGG+   GL      +R P   VQ KPVK
Sbjct: 147 RRPRPGRRGRAGSHGRRSPGGGSEANGLALVSGFKRLPRQDVQMKPVK 194


>BC108906-1|AAI08907.1|  938|Homo sapiens TJP3 protein protein.
          Length = 938

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
 Frame = -3

Query: 396 RLPRPSNRNALLLHGRNRQGGGTYPRGLT-----RRPP---VQSKPVK 277
           R PRP  R     HGR   GGG+   GL      +R P   VQ KPVK
Sbjct: 166 RRPRPGRRGRAGSHGRRSPGGGSEANGLALVSGFKRLPRQDVQMKPVK 213


>AC005954-1|AAC72274.1|  952|Homo sapiens ZO-3 [Homo sapiens]
           protein.
          Length = 952

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
 Frame = -3

Query: 396 RLPRPSNRNALLLHGRNRQGGGTYPRGLT-----RRPP---VQSKPVK 277
           R PRP  R     HGR   GGG+   GL      +R P   VQ KPVK
Sbjct: 166 RRPRPGRRGRAGSHGRRSPGGGSEANGLALVSGFKRLPRQDVQMKPVK 213


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,700,667
Number of Sequences: 237096
Number of extensions: 1456831
Number of successful extensions: 2402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2402
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)