Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328E06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   3.3  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   3.3  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   3.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   5.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   7.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   7.7  

>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
 Frame = +1

Query: 157 IDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQLAEP 336
           +D  + +++    A M+K+ E+M+   S +  +   N+ K          ++ S      
Sbjct: 81  LDGWYQTLQSAISAHMKKVREQMAGILSRIPEQGVVNWNK-----IPEGANTTSTTKIID 135

Query: 337 SHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPE-EIVVKTVDN 459
            H  ++N     D  D  +  +R  V    P+ E ++ TV +
Sbjct: 136 GHVVTINETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSS 177


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
 Frame = +1

Query: 157 IDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQLAEP 336
           +D  + +++    A M+K+ E+M+   S +  +   N+ K          ++ S      
Sbjct: 81  LDGWYQTLQSAISAHMKKVREQMAGILSRIPEQGVVNWNK-----IPEGANTTSTTKIID 135

Query: 337 SHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPE-EIVVKTVDN 459
            H  ++N     D  D  +  +R  V    P+ E ++ TV +
Sbjct: 136 GHVVTINETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSS 177


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
 Frame = +1

Query: 157 IDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQLAEP 336
           +D  + +++    A M+K+ E+M+   S +  +   N+ K          ++ S      
Sbjct: 81  LDGWYQTLQSAISAHMKKVREQMAGILSRIPEQGVVNWNK-----IPEGANTTSTTKIID 135

Query: 337 SHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPE-EIVVKTVDN 459
            H  ++N     D  D  +  +R  V    P+ E ++ TV +
Sbjct: 136 GHVVAINETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSS 177


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 122 LLRPLSAIFHVICRVEIVETKQTLKRSRVNTF 27
           L  PL+ I H  C   I  T+   + +R N F
Sbjct: 287 LEEPLTTIQHNNCLTRIPSTRINKQHTRGNNF 318


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 133 IKLGDFSVIDTEFSS 177
           I+ GD+ V++TE+SS
Sbjct: 379 IQNGDYVVLETEWSS 393


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 198 RNEEDGRRNEQIQIRTHEQRK 260
           +NE+  +  EQ++ R  EQR+
Sbjct: 61  KNEQQRKEMEQMREREREQRE 81


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 133 IKLGDFSVIDTEFSS 177
           I+ GD+ V++TE+SS
Sbjct: 85  IQNGDYVVLETEWSS 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,084
Number of Sequences: 438
Number of extensions: 2025
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)