Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328E03f
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    25   2.4  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   2.4  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    24   4.2  
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    23   7.3  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    23   7.3  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    23   9.6  

>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +1

Query: 61  KTNRRRASRPKSLILMNLDNFCRSHGQVPATHLSNVCLINFSMVVFCDYHG 213
           K  + +  R +  I  N+    + + +  A  ++N+  ++ S VVFC  HG
Sbjct: 324 KITKTKNGRERREIYKNIRELRKDYRKYEAKTVANI--VSASKVVFCTLHG 372


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 91  KSLILMNLDNF--CRSHGQVPATHLSNVCLINFSMVVFCDYH 210
           KSL LM   +   C S      + L N+CL +F  +  C YH
Sbjct: 39  KSLHLMTSQHIFKCLSSCNYALSILHNICLASFLYLSKCYYH 80


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 166 HLKDASPVLDHAICKSYPDSSKLTTSDAR 80
           HL+D S    H++ KS    + L TSD R
Sbjct: 211 HLQDVSSPSAHSLEKSLHKPASLQTSDKR 239


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 153 ASFKCLPYQLFDGSFLRLPWLSRXT 227
           AS KCLP   +  S LR P L   T
Sbjct: 2   ASPKCLPESNYSTSHLRFPRLQSIT 26


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 111 IHQN*RLRTRGPPSIGFDLIKALIP 37
           IH +  L  +  PS GF +I++L+P
Sbjct: 402 IHASSTLVLKKDPSFGFSVIESLMP 426


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -1

Query: 265 LRAPSPGSKPXXPVXRDNHGSRRKLPSKS**GRHLKDASPVLDHAICKSYPDSSKLTTSD 86
           LR    GSK      R  H   RK PSK       +D    ++ ++ K  P S +   S 
Sbjct: 228 LRTKPKGSKSRARNERKFHAKTRKTPSKPVTNNEDEDIKRAIELSL-KEMPQSRE-PPSY 285

Query: 85  ARPS 74
            RPS
Sbjct: 286 ERPS 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,233,509
Number of Sequences: 5004
Number of extensions: 21699
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)