Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328E03f
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    27   1.9  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     27   1.9  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    27   1.9  
Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr...    27   2.5  
U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr...    26   4.4  
AF040650-3|ABE73333.1|  836|Caenorhabditis elegans Hypothetical ...    25   7.6  
AF040650-2|AAT81190.1|  939|Caenorhabditis elegans Hypothetical ...    25   7.6  
AF040650-1|AAB95011.1|  952|Caenorhabditis elegans Hypothetical ...    25   7.6  

>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 135 WSSTGDASFKCLPYQLFDGSFLRLPWLSRXTGXSGF 242
           WSS  D    C+ Y +  G+  R P+L    G   F
Sbjct: 13  WSSWADFIMSCIGYAIGLGNVWRFPYLCYQNGGGAF 48


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 135 WSSTGDASFKCLPYQLFDGSFLRLPWLSRXTGXSGF 242
           WSS  D    C+ Y +  G+  R P+L    G   F
Sbjct: 13  WSSWADFIMSCIGYAIGLGNVWRFPYLCYQNGGGAF 48


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 135 WSSTGDASFKCLPYQLFDGSFLRLPWLSRXTGXSGF 242
           WSS  D    C+ Y +  G+  R P+L    G   F
Sbjct: 13  WSSWADFIMSCIGYAIGLGNVWRFPYLCYQNGGGAF 48


>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical
           protein F17C11.10 protein.
          Length = 1101

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 161 ERCVAGT*PCDLQKLSRFIKINDFG 87
           ER V+ + P DL    RF+K N FG
Sbjct: 440 ERFVSNSSPMDLDATQRFLKYNRFG 464


>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical protein
            ZK430.5 protein.
          Length = 1276

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 61   KTNRRRASRPKSLILMNLDNFCRSHG 138
            K N +R +R + L++  + NFC+ HG
Sbjct: 1229 KDNLKR-TRKRKLLVSTIPNFCKEHG 1253


>AF040650-3|ABE73333.1|  836|Caenorhabditis elegans Hypothetical
           protein T04B8.5c protein.
          Length = 836

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 139 DHAICKSYPDSSKLTTSDARPSVD 68
           DH +C   P ++  + + A PSVD
Sbjct: 744 DHVVCHYQPPNATASANTATPSVD 767


>AF040650-2|AAT81190.1|  939|Caenorhabditis elegans Hypothetical
           protein T04B8.5b protein.
          Length = 939

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 139 DHAICKSYPDSSKLTTSDARPSVD 68
           DH +C   P ++  + + A PSVD
Sbjct: 847 DHVVCHYQPPNATASANTATPSVD 870


>AF040650-1|AAB95011.1|  952|Caenorhabditis elegans Hypothetical
           protein T04B8.5a protein.
          Length = 952

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 139 DHAICKSYPDSSKLTTSDARPSVD 68
           DH +C   P ++  + + A PSVD
Sbjct: 860 DHVVCHYQPPNATASANTATPSVD 883


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,963,572
Number of Sequences: 27780
Number of extensions: 124691
Number of successful extensions: 336
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)