Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328E03f
         (301 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    27   0.066
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    27   0.066
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.46 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   1.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   4.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   5.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   7.6  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.6 bits (56), Expect = 0.066
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 267 FSGLPLRDRNLXXRXPVTTMVVAENYHRKVDKAD 166
           F+ LPL D+ L  R     +++A   HR +D  D
Sbjct: 255 FTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKD 288


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.6 bits (56), Expect = 0.066
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 267 FSGLPLRDRNLXXRXPVTTMVVAENYHRKVDKAD 166
           F+ LPL D+ L  R     +++A   HR +D  D
Sbjct: 255 FTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKD 288


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 0.46
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 88  PKSLILMNLDNFCRSHGQVPAT 153
           P+ L  +NL + CR HG  PAT
Sbjct: 430 PRELEAVNLGSACRIHGS-PAT 450


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 211 GCHGXPGXQVSIPERE 258
           GCH  PG Q  + ++E
Sbjct: 246 GCHCKPGYQADVEKQE 261


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = -2

Query: 111 IHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACIS 4
           I+Q   L  +   +IG+ + +  +PS++ V+++ +S
Sbjct: 227 IYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVS 262


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = +1

Query: 199 CDYHGCHGXPG 231
           C  H  HG PG
Sbjct: 329 CGVHNLHGMPG 339


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 69  IGFDLIKALIPSLVRVLIACIS 4
           +GF ++   IPS++ V+I+ +S
Sbjct: 231 MGFFMMDYYIPSILIVVISWVS 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,519
Number of Sequences: 438
Number of extensions: 1527
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)