Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328E02f
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   172   3e-44
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    31   0.091
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    25   4.5  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   7.9  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    25   7.9  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  172 bits (418), Expect = 3e-44
 Identities = 87/134 (64%), Positives = 103/134 (76%)
 Frame = -3

Query: 479 GIYPAGDPL*LNFPYXWTPNIXGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDK 300
           GIYPA DPL         P I G EHYN+A  VQ++LQ+YKSLQDIIAILGMDELSE DK
Sbjct: 389 GIYPAVDPLDSK-SRMMDPRILGEEHYNLAGSVQQMLQEYKSLQDIIAILGMDELSEADK 447

Query: 299 LTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVG 120
           LTV RARK+QRFLSQPF VAEVFTG  G+LV L++TI+ F +IL G +D LPE AFYMVG
Sbjct: 448 LTVERARKVQRFLSQPFAVAEVFTGIEGRLVSLKDTIRSFKEILEGKHDSLPESAFYMVG 507

Query: 119 PIEEVVAKADTLAK 78
            I++ V KA+ +A+
Sbjct: 508 SIDDAVKKAEKIAQ 521


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 31.1 bits (67), Expect = 0.091
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = -3

Query: 401 YNVARG-VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 255
           +N  R  +++I+Q   S+ +II ++G   LSE DK+T+  A  I+  FL Q
Sbjct: 480 FNTLRDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTLDIAGIIKNDFLQQ 530


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 199 SSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSS 324
           S G      P+  S     CE N   +R R T ++ SSD S+
Sbjct: 130 SGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAST 171


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 175 LENPLIVSSSGTSLPACPVNTSATWKG 255
           L  PLI   +G   PA PVN  A W G
Sbjct: 673 LNGPLIFGGTGYIPPATPVNYLA-WSG 698


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 324 HTQNSNNVLQGFVVLKNFLNSTCNIVVLSSXNIGGPXIREVESKR 458
           +TQ SN +L+  V +KN    T ++ + S+ +I GP ++ +E  R
Sbjct: 306 YTQ-SNELLETSVFVKNIPPETSDVSLKSAMSIFGP-VKAIEFAR 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,216
Number of Sequences: 5004
Number of extensions: 41106
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)