Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328E02f
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 32 0.21
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 32 0.21
07_03_1201 + 24791588-24792619 30 1.1
11_01_0151 - 1263237-1263406,1267405-1267646,1267681-1267781,126... 29 2.0
03_06_0672 + 35443883-35444051,35444151-35444482 29 2.0
11_06_0759 + 27008772-27009571,27010457-27010576,27011683-270119... 29 2.6
02_01_0150 + 1063732-1064214,1064290-1064355,1064721-1064803,106... 29 2.6
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340... 28 3.4
07_03_0504 - 18842442-18844668,18845418-18845428 28 4.5
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677... 28 4.5
01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437... 28 4.5
09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124... 27 6.0
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 27 6.0
09_02_0289 - 6941154-6941399,6941630-6941722,6941801-6941884,694... 27 7.9
01_03_0233 + 14042548-14044950 27 7.9
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 32.3 bits (70), Expect = 0.21
Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -3
Query: 380 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 255
+++LQ L +I+ ++G D L+E DK+T+ A+ ++ +L+Q
Sbjct: 500 REVLQREDDLNEIVQLVGKDALAESDKITLETAKLLREDYLAQ 542
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 32.3 bits (70), Expect = 0.21
Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -3
Query: 380 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 255
+++LQ L +I+ ++G D L+E DK+T+ A+ ++ +L+Q
Sbjct: 489 REVLQREDDLNEIVQLVGKDALAESDKITLETAKLLREDYLAQ 531
>07_03_1201 + 24791588-24792619
Length = 343
Score = 29.9 bits (64), Expect = 1.1
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = -3
Query: 356 SLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPL--EETIKG 183
S D + +L ++L D R + RF+ +PF AE G +V L E +K
Sbjct: 227 SRPDRVLLLRYEDLLR-DGAAGEHVRAMARFMGRPFSAAEEAAGAVASVVELCSFERMKA 285
Query: 182 FS---KILAGDYDHLPEVAFYMVG 120
+ AG Y +P AF+ G
Sbjct: 286 LEVNRRGTAGSYKSMPRDAFFRKG 309
>11_01_0151 -
1263237-1263406,1267405-1267646,1267681-1267781,
1268010-1268780
Length = 427
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 220 ACPVNTSATWKGCERNL*ILRARATVNLSSSDNSSI 327
A P+ +S TWKG E L +++ R + + DN I
Sbjct: 42 AFPLVSSPTWKGIEHGLELVKQRIIWRVGNGDNIKI 77
>03_06_0672 + 35443883-35444051,35444151-35444482
Length = 166
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 395 VARGVQKILQDYKSLQDIIAILGMDELSEEDK 300
VA GVQ++++ KSL I A+ +E EE++
Sbjct: 84 VATGVQRLIKGIKSLSQIFAMYDDEEEDEEER 115
>11_06_0759 +
27008772-27009571,27010457-27010576,27011683-27011957,
27012516-27013783
Length = 820
Score = 28.7 bits (61), Expect = 2.6
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Frame = +3
Query: 177 GESFDSFLKWY*FTRMSSEHLSYLER------L*EEPLNFTCTCHCQLVFFRQLVHTQNS 338
G +FD + W F + L YLE + P TC V R LVH Q+S
Sbjct: 704 GFTFDCRVPWVTFKEEAMPSLQYLELKLYAGPAGKIPSGITCLPCLTKVILRYLVHYQSS 763
Query: 339 NNVLQGFVVLKNFLNSTCNIVVLS 410
+V ++ + N++VLS
Sbjct: 764 ASVQDTISKMRKESSEHPNMIVLS 787
>02_01_0150 +
1063732-1064214,1064290-1064355,1064721-1064803,
1065100-1065155,1065247-1066061
Length = 500
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = -3
Query: 380 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPL 201
+K+L+ ++Q+ ++ ++ E + A + + R LS F+ ++ AG LVP+
Sbjct: 181 KKMLKHRYAMQEAKHLVCDKNVTVEQSIHTALSSQFVR-LSSYFK--KIHMSGAGNLVPM 237
Query: 200 EETIKGFSKILAGD 159
E +K SKI AG+
Sbjct: 238 EIALKVASKIAAGE 251
>02_01_0473 -
3403547-3404241,3404455-3404983,3405299-3405477,
3405868-3405952,3406136-3406482,3407061-3407159,
3408135-3408636
Length = 811
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 220 ACPVNTSATWKGCERNL*ILR 282
A P NTS TWKG E L +L+
Sbjct: 440 AFPSNTSPTWKGIEHGLELLK 460
>07_03_0504 - 18842442-18844668,18845418-18845428
Length = 745
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -3
Query: 356 SLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVP 204
S +++++++ MD+ S +TV K+ FL A H+G +P
Sbjct: 310 SARNLVSLVQMDDDSNVSNMTVTIQNKVHEFLQFEAHEASFLEVHSGDDIP 360
>02_02_0099 +
6768115-6768285,6769950-6770034,6770501-6770628,
6771429-6771465,6773108-6774193,6774337-6774447,
6774701-6774817,6774818-6775120,6776092-6776513,
6776645-6777274
Length = 1029
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -3
Query: 188 KGFSKILAGD--YDHLPEVAFYMVGPIEEVVAK 96
KG +++AG + H FYM+ P EEVV K
Sbjct: 163 KGTERLVAGAQLFGHSTRQPFYMIQPSEEVVQK 195
>01_06_0705 + 31342236-31342415,31343086-31343391,31343555-31343796,
31343927-31344122,31344419-31344602,31344984-31345147,
31345454-31345981,31346530-31346630,31347619-31347634,
31347834-31347941,31348028-31348078,31349059-31349100,
31349442-31349541,31350039-31350256,31350367-31350807,
31350916-31351043,31351131-31351992
Length = 1288
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 105 NLLNRSNHVECYFWQMIIVPC*NFGESFDSFLKWY*FTRMSSEHL 239
N +NR NH++ +FW + ++ NF ++ + WY + S H+
Sbjct: 1240 NNINR-NHLDLFFWLLAVLSFLNF-LNYLFWASWYKYKPQQSAHV 1282
>09_01_0087 +
1245890-1246565,1247409-1247484,1247774-1247893,
1248927-1249002,1250767-1250835,1251019-1251099,
1251298-1251369,1251600-1251692,1251904-1252083,
1252558-1252641,1252729-1252872,1253089-1253178,
1255982-1256064,1256140-1256421,1256722-1256959,
1258307-1258957
Length = 1004
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 346 TLLLFWVWTSCLKK 305
+LLLFW W CLK+
Sbjct: 277 SLLLFWYWEDCLKQ 290
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 413 GAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARAR 279
G +HY + ++K LQD K+ +I G++ LSEE+ R R
Sbjct: 406 GTDHY-LRFMLRKKLQDIKNDDKMIQAEGVESLSEEELRQACRER 449
>09_02_0289 -
6941154-6941399,6941630-6941722,6941801-6941884,
6947011-6947146,6947310-6947455,6947826-6948051,
6948595-6948677,6949004-6949198,6949276-6949374,
6949762-6949875,6949949-6950036,6950353-6950558,
6950850-6950902,6951074-6951377,6952195-6952283,
6952675-6953052,6953665-6953726,6954124-6954189,
6955126-6955205
Length = 915
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +1
Query: 172 ILENPLIVSSSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSSIPKIA 339
++ N +S+ GT++ P N +A C ++ + A VN+ + + +P A
Sbjct: 368 VIRNMFNLSAPGTTICKQPANENADLDACVKSFATIDKLALVNVEGTGMAGVPGTA 423
>01_03_0233 + 14042548-14044950
Length = 800
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 299 LTVARARKIQRFLSQPFQVAEVFTGHAGKL--VPLEETIKG 183
L+V++A ++ +S + E FTGHA +L VPL +G
Sbjct: 539 LSVSQAMQVAANMSVMERACEFFTGHAAQLCGVPLRAVERG 579
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,785,522
Number of Sequences: 37544
Number of extensions: 254480
Number of successful extensions: 613
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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